Wall clock time and date at job start Wed Apr 15 2020 11:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 119.99702 * 2 1 4 4 H 1.48502 * 109.47208 * 270.00352 * 3 2 1 5 5 H 1.48498 * 109.47509 * 30.00339 * 3 2 1 6 6 H 1.48501 * 109.47401 * 150.00614 * 3 2 1 7 7 C 1.38796 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99872 * 359.97438 * 7 2 1 9 9 S 1.76196 * 119.99960 * 179.97438 * 7 2 1 10 10 C 1.81002 * 99.99971 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47339 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47610 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.47387 * 180.02562 * 12 11 10 14 14 C 1.34229 * 116.99881 * 180.02562 * 13 12 11 15 15 O 1.20822 * 120.00200 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99848 * 179.97438 * 14 13 12 17 17 H 1.08997 * 109.70235 * 59.48365 * 16 14 13 18 18 C 1.53347 * 109.67368 * 180.02562 * 16 14 13 19 19 C 1.52915 * 108.67477 * 187.26786 * 18 16 14 20 20 N 1.45755 * 110.48805 * 309.24197 * 19 18 16 21 21 C 1.33362 * 124.10233 * 19.07670 * 20 19 18 22 22 O 1.21282 * 118.24236 * 177.75624 * 21 20 19 23 23 C 1.50173 * 123.50947 * 357.77733 * 21 20 19 24 24 H 0.96995 * 120.00203 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47117 * 59.99942 * 10 9 7 26 26 H 1.09000 * 109.47323 * 299.99918 * 10 9 7 27 27 H 1.09001 * 109.46905 * 60.00006 * 11 10 9 28 28 H 1.09000 * 109.47004 * 300.00307 * 11 10 9 29 29 H 1.09001 * 109.46762 * 60.00188 * 12 11 10 30 30 H 1.09004 * 109.47320 * 300.00841 * 12 11 10 31 31 H 1.09004 * 109.59985 * 307.01717 * 18 16 14 32 32 H 1.09001 * 109.60890 * 67.50734 * 18 16 14 33 33 H 1.08997 * 109.30705 * 69.55232 * 19 18 16 34 34 H 1.09006 * 109.29993 * 188.93492 * 19 18 16 35 35 H 0.96997 * 117.95339 * 199.07850 * 20 19 18 36 36 H 1.08999 * 109.40190 * 257.45573 * 23 21 20 37 37 H 1.08997 * 109.39984 * 137.71247 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4403 0.6999 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5958 -3.2362 -0.0021 12 6 5.8615 -4.7429 -0.0012 13 8 7.2937 -4.9818 -0.0017 14 6 7.6980 -6.2618 -0.0016 15 8 6.8822 -7.1530 -0.0016 16 6 9.1695 -6.5872 -0.0027 17 1 9.6415 -6.1574 0.8808 18 6 9.3618 -8.1085 -0.0029 19 6 10.8490 -8.4141 0.1792 20 7 11.6467 -7.6530 -0.7741 21 6 11.2122 -6.5661 -1.4131 22 8 11.9807 -5.9902 -2.1539 23 6 9.8225 -6.0168 -1.2642 24 1 -0.4850 0.8400 0.0004 25 1 3.6433 -3.4317 -0.8907 26 1 3.6441 -3.4313 0.8893 27 1 6.0394 -2.7889 0.8874 28 1 6.0380 -2.7894 -0.8926 29 1 5.4178 -5.1906 -0.8905 30 1 5.4193 -5.1894 0.8894 31 1 8.7949 -8.5489 0.8173 32 1 9.0173 -8.5206 -0.9514 33 1 11.1497 -8.1494 1.1929 34 1 11.0198 -9.4792 0.0225 35 1 12.5502 -7.9560 -0.9551 36 1 9.2287 -6.2928 -2.1356 37 1 9.8687 -4.9305 -1.1884 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805492642.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:17 Heat of formation + Delta-G solvation = -171.107721 kcal Electronic energy + Delta-G solvation = -19643.817819 eV Core-core repulsion = 16317.475885 eV Total energy + Delta-G solvation = -3326.341934 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.99812 -40.90640 -38.17825 -37.24748 -35.00936 -34.68924 -34.22702 -30.71696 -28.41778 -27.82127 -26.32717 -24.35896 -22.77649 -21.85867 -20.25654 -19.64682 -18.78147 -18.44483 -17.87227 -17.44465 -17.11002 -16.99450 -16.39533 -16.04522 -15.98012 -15.26000 -14.96951 -14.94933 -14.54003 -14.41958 -13.99616 -13.95653 -13.37413 -13.05375 -12.92304 -12.82406 -12.59621 -12.39582 -12.36166 -12.15099 -12.10429 -11.83523 -11.67297 -11.51119 -11.16981 -10.92215 -10.60282 -10.08447 -9.00992 -8.52461 -6.24526 1.05769 1.06824 1.32928 1.43224 1.50714 1.53928 1.83160 2.24433 2.28650 2.65833 2.85675 3.30176 3.49998 3.59941 3.68146 3.84070 3.95771 4.00542 4.12766 4.15613 4.29435 4.39452 4.50748 4.60919 4.65241 4.70626 4.83275 4.95335 4.99546 5.10523 5.15337 5.42957 5.69044 5.81581 6.09955 6.27276 6.62693 6.91279 7.15144 8.60542 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.037519 B = 0.002512 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.103001 B =11145.482677 C =11716.799944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.037 3.963 3 Si 0.926 3.074 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.226 1.226 7 C -0.525 4.525 8 H 0.052 0.948 9 S -0.209 6.209 10 C -0.074 4.074 11 C -0.089 4.089 12 C 0.078 3.922 13 O -0.354 6.354 14 C 0.467 3.533 15 O -0.530 6.530 16 C -0.075 4.075 17 H 0.141 0.859 18 C -0.122 4.122 19 C 0.112 3.888 20 N -0.711 5.711 21 C 0.525 3.475 22 O -0.604 6.604 23 C -0.124 4.124 24 H 0.277 0.723 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.408 0.592 36 H 0.106 0.894 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.424 -17.917 2.619 30.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.168 4.168 3 Si 0.747 3.253 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.150 1.150 7 C -0.672 4.672 8 H 0.070 0.930 9 S 0.019 5.981 10 C -0.222 4.222 11 C -0.128 4.128 12 C 0.003 3.997 13 O -0.271 6.271 14 C 0.311 3.689 15 O -0.419 6.419 16 C -0.094 4.094 17 H 0.159 0.841 18 C -0.160 4.160 19 C -0.011 4.011 20 N -0.362 5.362 21 C 0.312 3.688 22 O -0.486 6.486 23 C -0.164 4.164 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.244 0.756 36 H 0.124 0.876 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 24.834 -16.834 2.314 30.090 hybrid contribution -1.479 -0.507 -0.219 1.579 sum 23.354 -17.341 2.095 29.164 Atomic orbital electron populations 1.70037 1.07693 1.29159 1.49117 1.25795 0.95433 1.02852 0.92725 0.85709 0.80830 0.78549 0.80242 1.18636 1.18815 1.14960 1.22349 0.90094 0.96316 1.58451 0.93008 1.83840 1.07484 1.09144 1.97590 1.22977 0.99009 0.96000 1.04237 1.21156 0.92765 0.93789 1.05060 1.23017 0.77041 0.96563 1.03112 1.86473 1.27943 1.29288 1.83361 1.24045 0.93125 0.80268 0.71454 1.90687 1.56492 1.48457 1.46242 1.21278 0.86754 0.99450 1.01894 0.84102 1.21874 0.97027 0.91633 1.05474 1.21646 0.88704 0.97583 0.93130 1.45532 1.18970 1.27663 1.44002 1.20096 0.89572 0.80185 0.78943 1.90781 1.56952 1.59914 1.40936 1.21603 0.92357 1.03784 0.98651 0.91377 0.91128 0.90943 0.89548 0.89709 0.90889 0.90621 0.87664 0.90647 0.88771 0.87089 0.75569 0.87590 0.86576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.54 13.97 21.65 0.30 -56.23 16 2 C 0.04 2.14 5.50 84.86 0.47 2.61 16 3 Si 0.93 43.57 27.74 68.60 1.90 45.48 16 4 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.23 -10.17 6.74 99.48 0.67 -9.50 16 7 C -0.52 -30.56 10.04 67.95 0.68 -29.88 16 8 H 0.05 3.28 8.03 -2.91 -0.02 3.26 16 9 S -0.21 -9.76 19.41 -56.49 -1.10 -10.85 16 10 C -0.07 -2.67 5.67 71.98 0.41 -2.26 16 11 C -0.09 -2.43 5.60 30.59 0.17 -2.26 16 12 C 0.08 1.86 5.47 71.98 0.39 2.25 16 13 O -0.35 -7.57 10.17 -51.41 -0.52 -8.10 16 14 C 0.47 8.80 7.23 71.24 0.51 9.31 16 15 O -0.53 -12.91 15.65 21.98 0.34 -12.57 16 16 C -0.07 -0.81 2.71 -11.40 -0.03 -0.84 16 17 H 0.14 0.94 8.13 -2.39 -0.02 0.92 16 18 C -0.12 -0.88 4.70 30.68 0.14 -0.74 16 19 C 0.11 0.29 7.17 86.49 0.62 0.91 16 20 N -0.71 -6.14 5.45 -467.31 -2.55 -8.69 16 21 C 0.52 8.53 7.71 87.71 0.68 9.21 16 22 O -0.60 -15.89 17.78 -3.04 -0.05 -15.95 16 23 C -0.12 -1.67 5.30 29.71 0.16 -1.51 16 24 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 25 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 1.75 8.13 -2.39 -0.02 1.73 16 30 H 0.08 1.78 8.13 -2.38 -0.02 1.76 16 31 H 0.10 0.70 7.90 -2.39 -0.02 0.69 16 32 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 33 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.11 -0.17 8.14 -2.38 -0.02 -0.19 16 35 H 0.41 2.84 8.80 -92.71 -0.82 2.02 16 36 H 0.11 1.46 8.09 -2.39 -0.02 1.44 16 37 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -76.33 328.87 2.76 -73.57 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 0.22 Total: 6.55 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 4.20 Total: -13.21 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -2.24 Total: -64.92 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.23 Total: -36.61 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.90 Total: 45.48 kcal Atomic # 16 Polarization: -9.76 SS G_CDS: -1.10 Total: -10.85 kcal Total: -76.33 2.76 -73.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805492642.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.539 kcal (2) G-P(sol) polarization free energy of solvation -76.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds