Wall clock time and date at job start Wed Apr 15 2020 11:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99281 * 2 1 4 4 H 1.48507 * 109.47044 * 274.98961 * 3 2 1 5 5 H 1.48495 * 109.47401 * 34.99484 * 3 2 1 6 6 H 1.48501 * 109.46893 * 154.99624 * 3 2 1 7 7 C 1.37869 * 120.00535 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00498 * 189.57676 * 7 2 1 9 9 C 1.50706 * 119.99756 * 9.57613 * 7 2 1 10 10 C 1.53044 * 109.45788 * 185.44889 * 9 7 2 11 11 C 1.53186 * 109.31227 * 178.62808 * 10 9 7 12 12 N 1.46926 * 108.77680 * 54.63264 * 11 10 9 13 13 C 1.34781 * 120.63030 * 126.36475 * 12 11 10 14 14 O 1.21291 * 119.99750 * 0.02562 * 13 12 11 15 15 C 1.50689 * 120.00178 * 180.02562 * 13 12 11 16 16 S 1.81400 * 109.47272 * 180.02562 * 15 13 12 17 17 C 1.81407 * 103.00266 * 180.02562 * 16 15 13 18 18 C 1.50693 * 109.47021 * 180.02562 * 17 16 15 19 19 O 1.20822 * 120.00456 * 359.97438 * 18 17 16 20 20 O 1.34238 * 119.99866 * 180.02562 * 18 17 16 21 21 C 1.46918 * 118.74257 * 306.64845 * 12 11 10 22 22 C 1.52760 * 109.00775 * 53.30293 * 21 12 11 23 23 H 0.96999 * 120.00550 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.46213 * 305.41971 * 9 7 2 25 25 H 1.09001 * 109.49298 * 58.67571 * 10 9 7 26 26 H 1.08994 * 109.52581 * 298.59685 * 10 9 7 27 27 H 1.09005 * 109.58544 * 294.84988 * 11 10 9 28 28 H 1.09005 * 109.70806 * 174.49483 * 11 10 9 29 29 H 1.09002 * 109.47504 * 60.00630 * 15 13 12 30 30 H 1.08994 * 109.47549 * 300.00519 * 15 13 12 31 31 H 1.09004 * 109.46864 * 300.00472 * 17 16 15 32 32 H 1.08994 * 109.46891 * 59.99874 * 17 16 15 33 33 H 0.96702 * 116.99714 * 179.97438 * 20 18 17 34 34 H 1.08993 * 109.59259 * 173.14000 * 21 12 11 35 35 H 1.09002 * 109.58775 * 293.56586 * 21 12 11 36 36 H 1.09001 * 109.56492 * 185.55591 * 22 21 12 37 37 H 1.09001 * 109.36032 * 65.50559 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.3910 2.1075 -1.3948 5 1 1.5032 2.6200 0.8029 6 1 3.5954 1.4122 0.5918 7 6 2.0047 -1.1939 -0.0005 8 1 3.0734 -1.2005 0.1551 9 6 1.2669 -2.4899 -0.2182 10 6 2.2331 -3.6630 -0.0376 11 6 1.4725 -4.9793 -0.2258 12 7 0.7940 -4.9514 -1.5288 13 6 0.9782 -5.9453 -2.4203 14 8 1.7094 -6.8745 -2.1501 15 6 0.2758 -5.9020 -3.7528 16 16 0.7235 -7.3696 -4.7204 17 6 -0.2034 -7.1399 -6.2628 18 6 0.0670 -8.2979 -7.1884 19 8 0.8092 -9.1867 -6.8434 20 8 -0.5159 -8.3415 -8.3969 21 6 -0.0840 -3.8164 -1.8439 22 6 0.6897 -2.5159 -1.6354 23 1 -0.4851 0.8400 0.0004 24 1 0.4563 -2.5724 0.5057 25 1 2.6616 -3.6304 0.9641 26 1 3.0310 -3.5950 -0.7770 27 1 0.7341 -5.0915 0.5682 28 1 2.1713 -5.8153 -0.1955 29 1 0.5767 -5.0045 -4.2932 30 1 -0.8026 -5.8865 -3.5948 31 1 -1.2698 -7.0928 -6.0422 32 1 0.1102 -6.2117 -6.7403 33 1 -0.3117 -9.1039 -8.9555 34 1 -0.4099 -3.8836 -2.8818 35 1 -0.9519 -3.8317 -1.1846 36 1 0.0198 -1.6668 -1.7709 37 1 1.5018 -2.4584 -2.3602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821320726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:19 Heat of formation + Delta-G solvation = -150.580384 kcal Electronic energy + Delta-G solvation = -20235.242510 eV Core-core repulsion = 16909.790707 eV Total energy + Delta-G solvation = -3325.451802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.22359 -41.06840 -38.42962 -37.16321 -35.33251 -33.37575 -32.05376 -31.50887 -30.48058 -27.84301 -24.72697 -23.93022 -23.12010 -21.67071 -19.92455 -19.17335 -18.64607 -18.03282 -17.95023 -17.21660 -17.02286 -16.65673 -16.53706 -16.31165 -14.98514 -14.91406 -14.81661 -14.45548 -14.25432 -14.13514 -14.03162 -13.88984 -13.38236 -13.22825 -13.14619 -12.77221 -12.59637 -12.48859 -12.18020 -11.96725 -11.79480 -11.49060 -11.12498 -10.98624 -10.90501 -10.71230 -10.39263 -9.59869 -8.75872 -8.11711 -6.18801 0.14367 1.11754 1.38265 1.40897 1.44401 1.52425 1.53502 2.05974 2.12740 2.44959 3.18291 3.42318 4.03298 4.05204 4.09891 4.20561 4.26429 4.29147 4.34910 4.36278 4.47544 4.58122 4.72035 4.86835 4.97351 5.18839 5.25135 5.37389 5.50379 5.54997 5.66984 5.98688 6.05509 6.39282 6.43134 6.90785 6.91333 7.07958 7.47656 8.95681 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.028741 B = 0.003176 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.979260 B = 8813.499592 C = 9377.028278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.023 3.977 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.044 0.956 9 C 0.043 3.957 10 C -0.113 4.113 11 C 0.118 3.882 12 N -0.598 5.598 13 C 0.524 3.476 14 O -0.575 6.575 15 C -0.122 4.122 16 S -0.188 6.188 17 C -0.109 4.109 18 C 0.503 3.497 19 O -0.540 6.540 20 O -0.502 6.502 21 C 0.112 3.888 22 C -0.111 4.111 23 H 0.262 0.738 24 H 0.009 0.991 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.138 0.862 30 H 0.146 0.854 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.433 0.567 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.261 -10.570 -14.594 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.177 4.177 3 Si 0.768 3.232 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.152 4.152 11 C -0.004 4.004 12 N -0.330 5.330 13 C 0.312 3.688 14 O -0.455 6.455 15 C -0.273 4.273 16 S 0.036 5.964 17 C -0.257 4.257 18 C 0.345 3.655 19 O -0.430 6.430 20 O -0.317 6.317 21 C -0.010 4.010 22 C -0.150 4.150 23 H 0.071 0.929 24 H 0.027 0.973 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.156 0.844 30 H 0.164 0.836 31 H 0.173 0.827 32 H 0.170 0.830 33 H 0.296 0.704 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.267 -11.663 -13.844 18.852 hybrid contribution -0.038 1.676 -0.286 1.701 sum -5.304 -9.987 -14.130 18.097 Atomic orbital electron populations 1.70027 1.06788 1.27241 1.50925 1.25559 0.95539 1.01713 0.94839 0.85799 0.78866 0.80389 0.78119 1.20068 1.21064 1.20001 1.21504 0.93952 0.92707 1.49209 0.93750 1.18621 0.93732 0.91708 0.93448 1.21852 0.98316 0.94404 1.00593 1.21589 0.96561 0.98235 0.84053 1.48165 1.46572 1.21935 1.16323 1.20161 0.81360 0.81601 0.85650 1.90704 1.40225 1.35693 1.78923 1.23595 1.06441 1.01760 0.95478 1.88572 1.63542 1.30470 1.13796 1.23155 1.07602 1.00097 0.94850 1.22480 0.75964 0.85887 0.81183 1.90800 1.36387 1.40024 1.75806 1.84445 1.67543 1.52510 1.27161 1.21910 0.92130 0.84413 1.02516 1.21659 0.98903 0.95977 0.98442 0.92906 0.97290 0.92084 0.93908 0.91000 0.90375 0.84399 0.83577 0.82688 0.83021 0.70423 0.87151 0.91017 0.91755 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.08 12.16 21.45 0.26 -48.82 16 2 C 0.02 1.21 5.19 84.65 0.44 1.65 16 3 Si 0.94 41.82 29.55 68.60 2.03 43.85 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.54 -28.10 8.48 25.60 0.22 -27.88 16 8 H 0.04 2.36 7.77 -2.91 -0.02 2.34 16 9 C 0.04 1.99 1.93 -11.51 -0.02 1.97 16 10 C -0.11 -4.51 5.30 30.67 0.16 -4.35 16 11 C 0.12 4.09 6.44 86.36 0.56 4.65 16 12 N -0.60 -18.91 2.98 -819.76 -2.44 -21.35 16 13 C 0.52 16.28 7.72 87.65 0.68 16.96 16 14 O -0.57 -22.62 15.28 -3.07 -0.05 -22.66 16 15 C -0.12 -2.51 4.77 71.23 0.34 -2.17 16 16 S -0.19 -4.61 20.01 -56.49 -1.13 -5.74 16 17 C -0.11 -1.42 6.54 71.23 0.47 -0.95 16 18 C 0.50 8.49 8.35 71.23 0.59 9.09 16 19 O -0.54 -14.29 16.62 21.98 0.37 -13.92 16 20 O -0.50 -5.00 13.42 -51.50 -0.69 -5.69 16 21 C 0.11 3.28 6.31 86.22 0.54 3.82 16 22 C -0.11 -4.41 5.19 30.53 0.16 -4.25 16 23 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 24 H 0.01 0.45 8.09 -2.39 -0.02 0.43 16 25 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 28 H 0.08 2.76 7.00 -2.38 -0.02 2.75 16 29 H 0.14 2.19 7.68 -2.39 -0.02 2.17 16 30 H 0.15 2.00 7.95 -2.39 -0.02 1.98 16 31 H 0.16 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.43 0.96 9.10 -74.06 -0.67 0.29 16 34 H 0.11 2.27 5.93 -2.39 -0.01 2.25 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.06 2.86 6.87 -2.39 -0.02 2.84 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -73.10 323.26 2.89 -70.22 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 0.41 Total: 5.58 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 4.13 Total: -1.46 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -2.18 Total: -70.17 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -0.37 Total: -42.27 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: -4.61 SS G_CDS: -1.13 Total: -5.74 kcal Total: -73.10 2.89 -70.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821320726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.364 kcal (2) G-P(sol) polarization free energy of solvation -73.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds