Wall clock time and date at job start Wed Apr 15 2020 11:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99820 * 2 1 4 4 H 1.48504 * 109.46770 * 239.99898 * 3 2 1 5 5 H 1.48503 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47459 * 119.99855 * 3 2 1 7 7 C 1.38801 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00044 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00232 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47401 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47242 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47070 * 180.02562 * 12 11 10 14 14 C 1.34234 * 116.99938 * 179.97438 * 13 12 11 15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 12 17 17 C 1.52992 * 109.47257 * 180.02562 * 16 14 13 18 18 H 1.09007 * 110.43684 * 54.29910 * 17 16 14 19 19 C 1.54628 * 110.48741 * 176.83906 * 17 16 14 20 20 C 1.54477 * 101.76554 * 93.88116 * 19 17 16 21 21 N 1.46765 * 105.47272 * 25.41648 * 20 19 17 22 22 C 1.34742 * 111.34995 * 343.01565 * 21 20 19 23 23 O 1.21283 * 125.11968 * 180.37095 * 22 21 20 24 24 H 0.96994 * 120.00112 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46764 * 60.00066 * 10 9 7 26 26 H 1.08999 * 109.47096 * 300.00054 * 10 9 7 27 27 H 1.08998 * 109.46945 * 59.99571 * 11 10 9 28 28 H 1.08999 * 109.47046 * 300.00093 * 11 10 9 29 29 H 1.08996 * 109.47090 * 59.99784 * 12 11 10 30 30 H 1.08999 * 109.47084 * 299.99957 * 12 11 10 31 31 H 1.09004 * 109.46932 * 300.00373 * 16 14 13 32 32 H 1.08997 * 109.47392 * 59.99712 * 16 14 13 33 33 H 1.08999 * 110.97025 * 211.99803 * 19 17 16 34 34 H 1.08996 * 110.97145 * 335.75962 * 19 17 16 35 35 H 1.09001 * 110.24889 * 144.41312 * 20 19 17 36 36 H 1.09000 * 110.24673 * 266.32759 * 20 19 17 37 37 H 0.97002 * 124.34865 * 162.98820 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9795 -5.3242 0.0012 12 6 3.1516 -6.3077 0.0018 13 8 2.6425 -7.6674 0.0018 14 6 3.5489 -8.6575 0.0018 15 8 4.7286 -8.3966 0.0023 16 6 3.0950 -10.0946 0.0024 17 6 4.3169 -11.0153 0.0029 18 1 4.9795 -10.7679 0.8324 19 6 3.8788 -12.4960 0.0834 20 6 3.8377 -12.8939 -1.4087 21 7 4.7719 -11.9842 -2.0823 22 6 5.0560 -10.9150 -1.3132 23 8 5.7943 -10.0057 -1.6277 24 1 -0.4850 0.8400 0.0004 25 1 3.1246 -3.7313 0.8906 26 1 3.1246 -3.7313 -0.8894 27 1 1.3706 -5.4846 -0.8885 28 1 1.3712 -5.4840 0.8914 29 1 3.7601 -6.1471 0.8918 30 1 3.7603 -6.1480 -0.8882 31 1 2.4959 -10.2860 0.8927 32 1 2.4953 -10.2866 -0.8872 33 1 4.6134 -13.0913 0.6257 34 1 2.8926 -12.5868 0.5386 35 1 4.1620 -13.9271 -1.5327 36 1 2.8309 -12.7648 -1.8059 37 1 5.1385 -12.1335 -2.9679 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884914016.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:21 Heat of formation + Delta-G solvation = -139.715580 kcal Electronic energy + Delta-G solvation = -19640.313437 eV Core-core repulsion = 16315.332768 eV Total energy + Delta-G solvation = -3324.980669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08815 -39.91810 -36.72757 -36.60228 -33.54148 -33.18201 -32.42308 -29.62617 -27.17023 -25.96990 -25.29265 -22.30951 -21.56910 -21.19742 -20.08415 -17.95422 -17.50837 -17.22132 -16.89653 -16.72574 -15.75173 -15.54969 -14.79991 -14.69676 -14.28121 -14.10991 -14.02473 -13.45724 -13.22570 -13.04229 -12.90481 -12.57463 -12.32270 -12.09687 -11.80305 -11.46103 -11.28299 -11.08665 -10.91725 -10.89879 -10.66460 -10.42105 -10.20749 -9.93877 -9.60876 -9.45493 -9.04948 -8.33943 -6.54339 -6.22710 -3.93621 2.24739 2.31885 2.61206 2.99506 3.23657 3.24870 3.29074 3.55988 3.89449 3.97197 4.16882 4.22231 4.49558 4.56994 4.84797 4.87446 5.00558 5.07839 5.13161 5.18958 5.26161 5.26910 5.33609 5.42986 5.51761 5.55896 5.82809 5.95669 6.21500 6.47837 6.49238 6.54418 6.65786 6.72972 7.61003 7.81269 8.01317 8.36882 9.23552 10.85428 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.047702 B = 0.002340 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.842031 B =11964.255290 C =12258.686907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.073 0.927 9 S -0.124 6.124 10 C -0.114 4.114 11 C -0.097 4.097 12 C 0.074 3.926 13 O -0.359 6.359 14 C 0.444 3.556 15 O -0.480 6.480 16 C -0.097 4.097 17 C -0.116 4.116 18 H 0.116 0.884 19 C -0.129 4.129 20 C 0.100 3.900 21 N -0.741 5.741 22 C 0.516 3.484 23 O -0.497 6.497 24 H 0.268 0.732 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.584 -29.070 -0.226 29.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.666 4.666 8 H 0.091 0.909 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.135 4.135 12 C -0.001 4.001 13 O -0.276 6.276 14 C 0.285 3.715 15 O -0.365 6.365 16 C -0.135 4.135 17 C -0.138 4.138 18 H 0.134 0.866 19 C -0.167 4.167 20 C -0.025 4.025 21 N -0.399 5.399 22 C 0.300 3.700 23 O -0.369 6.369 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 4.015 -28.477 -0.274 28.760 hybrid contribution 2.085 1.218 -0.429 2.453 sum 6.101 -27.259 -0.703 27.942 Atomic orbital electron populations 1.70007 1.05919 1.27493 1.47131 1.25018 0.95104 0.99114 0.94538 0.86203 0.79215 0.81090 0.78900 1.19907 1.20808 1.19901 1.22660 0.94576 0.90691 1.58701 0.90887 1.84618 1.08893 0.99234 1.96888 1.23183 1.03373 0.96373 1.03366 1.21274 0.96479 0.91602 1.04186 1.23234 0.97625 0.76656 1.02596 1.86444 1.40387 1.16925 1.83889 1.23470 0.85135 0.88783 0.74132 1.90801 1.17976 1.84702 1.43050 1.21201 0.98092 0.87580 1.06618 1.21825 0.97515 0.95584 0.98862 0.86606 1.22703 1.03902 0.94014 0.96087 1.22060 0.93746 0.94139 0.92538 1.46349 1.48900 1.24299 1.20394 1.20808 0.81264 0.81419 0.86515 1.90853 1.35826 1.34192 1.76012 0.92216 0.91731 0.91733 0.90442 0.90402 0.91215 0.91233 0.86325 0.87552 0.89317 0.88509 0.90177 0.90897 0.75210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 21.79 29.55 -169.99 -5.02 16.76 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -15.03 9.50 30.94 0.29 -14.74 16 8 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.12 -3.29 21.44 -107.50 -2.30 -5.59 16 10 C -0.11 -2.36 5.67 37.16 0.21 -2.15 16 11 C -0.10 -1.65 5.60 -26.73 -0.15 -1.80 16 12 C 0.07 1.15 5.47 37.16 0.20 1.35 16 13 O -0.36 -5.15 10.22 -39.27 -0.40 -5.55 16 14 C 0.44 5.90 7.75 36.01 0.28 6.18 16 15 O -0.48 -8.15 13.58 -25.92 -0.35 -8.50 16 16 C -0.10 -0.74 5.22 -27.89 -0.15 -0.89 16 17 C -0.12 -0.87 2.55 -90.64 -0.23 -1.10 16 18 H 0.12 0.98 7.96 -51.92 -0.41 0.57 16 19 C -0.13 -0.40 6.71 -25.10 -0.17 -0.57 16 20 C 0.10 0.31 7.78 -3.12 -0.02 0.29 16 21 N -0.74 -5.03 6.25 -59.12 -0.37 -5.40 16 22 C 0.52 5.65 7.44 -10.72 -0.08 5.57 16 23 O -0.50 -8.28 16.03 -15.96 -0.26 -8.53 16 24 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.06 1.31 8.14 -51.91 -0.42 0.89 16 26 H 0.06 1.33 8.14 -51.92 -0.42 0.90 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 30 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 31 H 0.12 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.10 0.10 7.90 -51.93 -0.41 -0.31 16 35 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 37 H 0.41 2.34 8.96 -40.82 -0.37 1.98 16 LS Contribution 331.26 15.07 4.99 4.99 Total: -1.00 -37.39 331.26 -8.27 -45.66 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.38 Total: -2.54 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 0.09 Total: -5.90 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.36 Total: -30.79 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -1.01 Total: -22.59 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.30 Total: -5.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -37.39 -8.27 -45.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884914016.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.054 kcal (2) G-P(sol) polarization free energy of solvation -37.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds