Wall clock time and date at job start Wed Apr 15 2020 11:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99820 * 2 1 4 4 H 1.48504 * 109.46770 * 239.99898 * 3 2 1 5 5 H 1.48503 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47459 * 119.99855 * 3 2 1 7 7 C 1.38801 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00044 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00232 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47401 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47242 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47070 * 180.02562 * 12 11 10 14 14 C 1.34234 * 116.99938 * 179.97438 * 13 12 11 15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 12 17 17 C 1.52992 * 109.47257 * 180.02562 * 16 14 13 18 18 H 1.09007 * 110.43684 * 54.29910 * 17 16 14 19 19 C 1.54628 * 110.48741 * 176.83906 * 17 16 14 20 20 C 1.54477 * 101.76554 * 93.88116 * 19 17 16 21 21 N 1.46765 * 105.47272 * 25.41648 * 20 19 17 22 22 C 1.34742 * 111.34995 * 343.01565 * 21 20 19 23 23 O 1.21283 * 125.11968 * 180.37095 * 22 21 20 24 24 H 0.96994 * 120.00112 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46764 * 60.00066 * 10 9 7 26 26 H 1.08999 * 109.47096 * 300.00054 * 10 9 7 27 27 H 1.08998 * 109.46945 * 59.99571 * 11 10 9 28 28 H 1.08999 * 109.47046 * 300.00093 * 11 10 9 29 29 H 1.08996 * 109.47090 * 59.99784 * 12 11 10 30 30 H 1.08999 * 109.47084 * 299.99957 * 12 11 10 31 31 H 1.09004 * 109.46932 * 300.00373 * 16 14 13 32 32 H 1.08997 * 109.47392 * 59.99712 * 16 14 13 33 33 H 1.08999 * 110.97025 * 211.99803 * 19 17 16 34 34 H 1.08996 * 110.97145 * 335.75962 * 19 17 16 35 35 H 1.09001 * 110.24889 * 144.41312 * 20 19 17 36 36 H 1.09000 * 110.24673 * 266.32759 * 20 19 17 37 37 H 0.97002 * 124.34865 * 162.98820 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9795 -5.3242 0.0012 12 6 3.1516 -6.3077 0.0018 13 8 2.6425 -7.6674 0.0018 14 6 3.5489 -8.6575 0.0018 15 8 4.7286 -8.3966 0.0023 16 6 3.0950 -10.0946 0.0024 17 6 4.3169 -11.0153 0.0029 18 1 4.9795 -10.7679 0.8324 19 6 3.8788 -12.4960 0.0834 20 6 3.8377 -12.8939 -1.4087 21 7 4.7719 -11.9842 -2.0823 22 6 5.0560 -10.9150 -1.3132 23 8 5.7943 -10.0057 -1.6277 24 1 -0.4850 0.8400 0.0004 25 1 3.1246 -3.7313 0.8906 26 1 3.1246 -3.7313 -0.8894 27 1 1.3706 -5.4846 -0.8885 28 1 1.3712 -5.4840 0.8914 29 1 3.7601 -6.1471 0.8918 30 1 3.7603 -6.1480 -0.8882 31 1 2.4959 -10.2860 0.8927 32 1 2.4953 -10.2866 -0.8872 33 1 4.6134 -13.0913 0.6257 34 1 2.8926 -12.5868 0.5386 35 1 4.1620 -13.9271 -1.5327 36 1 2.8309 -12.7648 -1.8059 37 1 5.1385 -12.1335 -2.9679 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884914016.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:21 Heat of formation + Delta-G solvation = -165.877468 kcal Electronic energy + Delta-G solvation = -19641.447901 eV Core-core repulsion = 16315.332768 eV Total energy + Delta-G solvation = -3326.115134 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.90642 -40.84326 -37.82277 -37.43802 -34.92736 -34.59960 -33.88372 -30.15816 -28.32325 -27.66459 -26.65855 -22.90988 -22.65483 -22.32091 -20.77346 -19.59805 -18.75184 -18.20017 -17.90147 -17.65448 -16.91139 -16.62176 -16.44312 -15.96576 -15.75189 -14.98524 -14.88493 -14.60518 -14.22643 -14.07615 -13.88115 -13.61177 -13.44746 -13.13413 -13.07259 -12.93991 -12.65294 -12.41043 -12.36472 -12.21162 -11.91787 -11.68845 -11.51288 -11.35929 -11.15611 -10.75431 -10.39580 -10.00467 -8.69967 -8.39440 -6.16258 1.24443 1.26346 1.40086 1.41691 1.49632 1.59287 1.87471 2.25678 2.48113 2.94794 3.25940 3.38061 3.47192 3.68233 3.81447 3.87895 3.98110 4.12984 4.17847 4.27087 4.30117 4.47766 4.55526 4.61244 4.66044 4.80770 4.91074 4.99203 5.10904 5.13996 5.23507 5.38042 5.51365 5.96473 6.04696 6.16098 6.76389 7.02718 7.31512 8.69733 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.047702 B = 0.002340 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.842031 B =11964.255290 C =12258.686907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.017 3.983 3 Si 0.994 3.006 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.072 0.928 9 S -0.180 6.180 10 C -0.093 4.093 11 C -0.083 4.083 12 C 0.082 3.918 13 O -0.359 6.359 14 C 0.436 3.564 15 O -0.522 6.522 16 C -0.089 4.089 17 C -0.116 4.116 18 H 0.100 0.900 19 C -0.115 4.115 20 C 0.093 3.907 21 N -0.732 5.732 22 C 0.498 3.502 23 O -0.572 6.572 24 H 0.273 0.727 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.160 0.840 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.991 -31.152 0.266 31.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.691 4.691 8 H 0.090 0.910 9 S 0.049 5.951 10 C -0.242 4.242 11 C -0.122 4.122 12 C 0.006 3.994 13 O -0.276 6.276 14 C 0.279 3.721 15 O -0.410 6.410 16 C -0.126 4.126 17 C -0.138 4.138 18 H 0.118 0.882 19 C -0.152 4.152 20 C -0.030 4.030 21 N -0.387 5.387 22 C 0.285 3.715 23 O -0.450 6.450 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.178 0.822 32 H 0.146 0.854 33 H 0.117 0.883 34 H 0.149 0.851 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 3.379 -30.639 0.215 30.826 hybrid contribution 2.276 1.701 -0.612 2.907 sum 5.655 -28.938 -0.397 29.488 Atomic orbital electron populations 1.70129 1.07587 1.28735 1.47698 1.26059 0.96080 1.03060 0.93661 0.85068 0.77955 0.76098 0.79305 1.19105 1.19728 1.18948 1.23021 0.94809 0.92031 1.59253 0.90965 1.84553 1.12845 1.00655 1.97059 1.23079 1.00878 0.96818 1.03441 1.21090 0.96869 0.89624 1.04579 1.22922 0.96559 0.77647 1.02267 1.86450 1.40724 1.16406 1.84057 1.24743 0.84517 0.90400 0.72422 1.90800 1.19836 1.85369 1.45004 1.21468 0.98592 0.83064 1.09459 1.21868 0.96946 0.98749 0.96241 0.88205 1.22792 1.05924 0.90128 0.96382 1.22444 0.93882 0.94471 0.92232 1.46495 1.48371 1.23608 1.20270 1.21546 0.80676 0.81185 0.88142 1.90804 1.39235 1.37173 1.77764 0.91822 0.91406 0.91810 0.90289 0.89757 0.91096 0.92163 0.82201 0.85442 0.88343 0.85134 0.87688 0.88856 0.74968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.89 13.22 21.65 0.29 -54.60 16 2 C 0.02 0.96 5.49 84.86 0.47 1.42 16 3 Si 0.99 44.56 29.55 68.60 2.03 46.58 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.54 -31.90 9.50 67.95 0.65 -31.25 16 8 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 9 S -0.18 -9.67 21.44 -56.49 -1.21 -10.88 16 10 C -0.09 -3.87 5.67 71.98 0.41 -3.46 16 11 C -0.08 -2.79 5.60 30.59 0.17 -2.62 16 12 C 0.08 2.53 5.47 71.98 0.39 2.92 16 13 O -0.36 -9.96 10.22 -51.46 -0.53 -10.49 16 14 C 0.44 11.32 7.75 71.24 0.55 11.87 16 15 O -0.52 -18.31 13.58 28.84 0.39 -17.92 16 16 C -0.09 -1.11 5.22 29.85 0.16 -0.95 16 17 C -0.12 -1.54 2.55 -10.80 -0.03 -1.57 16 18 H 0.10 1.65 7.96 -2.38 -0.02 1.63 16 19 C -0.11 -0.23 6.71 31.65 0.21 -0.02 16 20 C 0.09 0.22 7.78 86.83 0.68 0.89 16 21 N -0.73 -8.83 6.25 -459.37 -2.87 -11.70 16 22 C 0.50 10.89 7.44 87.85 0.65 11.55 16 23 O -0.57 -20.25 16.03 17.54 0.28 -19.97 16 24 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 25 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.06 2.64 8.14 -2.40 -0.02 2.62 16 27 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.07 2.17 8.13 -2.39 -0.02 2.15 16 30 H 0.06 1.97 8.13 -2.39 -0.02 1.96 16 31 H 0.16 0.72 8.13 -2.38 -0.02 0.70 16 32 H 0.13 1.12 8.14 -2.39 -0.02 1.11 16 33 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.13 -0.53 7.90 -2.39 -0.02 -0.55 16 35 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.41 4.38 8.96 -92.71 -0.83 3.55 16 Total: -1.00 -85.94 331.26 2.93 -83.01 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 0.24 Total: 7.17 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 4.31 Total: -11.22 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -2.58 Total: -66.30 kcal Atomic # 8 Polarization: -48.52 SS G_CDS: 0.15 Total: -48.37 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -9.67 SS G_CDS: -1.21 Total: -10.88 kcal Total: -85.94 2.93 -83.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884914016.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.863 kcal (2) G-P(sol) polarization free energy of solvation -85.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds