Wall clock time and date at job start Wed Apr 15 2020 11:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00477 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00494 * 3 2 1 6 6 H 1.48499 * 109.47352 * 330.00324 * 3 2 1 7 7 C 1.38798 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99738 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47049 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46888 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46674 * 180.02562 * 12 11 10 14 14 C 1.34235 * 116.99813 * 180.02562 * 13 12 11 15 15 O 1.20829 * 119.99934 * 359.97438 * 14 13 12 16 16 C 1.50693 * 119.99943 * 180.02562 * 14 13 12 17 17 C 1.53001 * 109.47374 * 179.97438 * 16 14 13 18 18 H 1.09001 * 110.43287 * 305.70431 * 17 16 14 19 19 C 1.54620 * 110.49195 * 183.15859 * 17 16 14 20 20 C 1.54477 * 101.76941 * 216.52686 * 19 17 16 21 21 N 1.46768 * 105.47289 * 25.41516 * 20 19 17 22 22 C 1.34663 * 111.33261 * 342.87097 * 21 20 19 23 23 O 1.21283 * 125.06506 * 180.52209 * 22 21 20 24 24 H 0.97005 * 119.99723 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47255 * 299.99975 * 10 9 7 26 26 H 1.09001 * 109.46783 * 60.00283 * 10 9 7 27 27 H 1.09000 * 109.47368 * 300.00269 * 11 10 9 28 28 H 1.09001 * 109.46801 * 60.00657 * 11 10 9 29 29 H 1.09000 * 109.47408 * 300.00333 * 12 11 10 30 30 H 1.09001 * 109.46790 * 60.00740 * 12 11 10 31 31 H 1.08995 * 109.47400 * 299.99691 * 16 14 13 32 32 H 1.09002 * 109.47525 * 59.99719 * 16 14 13 33 33 H 1.09010 * 110.96955 * 334.64204 * 19 17 16 34 34 H 1.09001 * 110.97130 * 98.36629 * 19 17 16 35 35 H 1.08998 * 110.24829 * 144.41086 * 20 19 17 36 36 H 1.08994 * 110.24690 * 266.41722 * 20 19 17 37 37 H 0.96995 * 124.35412 * 162.98283 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5477 1.4403 -0.7001 6 1 1.4477 2.6528 -0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9795 -5.3242 -0.0017 12 6 3.1516 -6.3076 -0.0037 13 8 2.6424 -7.6674 -0.0039 14 6 3.5489 -8.6575 -0.0051 15 8 4.7286 -8.3966 -0.0063 16 6 3.0950 -10.0945 -0.0059 17 6 4.3169 -11.0153 -0.0078 18 1 4.9789 -10.7675 -0.8376 19 6 3.8788 -12.4959 -0.0885 20 6 4.9252 -13.1840 0.8159 21 7 5.3785 -12.1463 1.7496 22 6 5.0570 -10.9155 1.3078 23 8 5.3202 -9.8790 1.8800 24 1 -0.4850 -0.8401 0.0004 25 1 3.1239 -3.7308 -0.8925 26 1 3.1252 -3.7316 0.8875 27 1 1.3718 -5.4844 0.8889 28 1 1.3700 -5.4842 -0.8911 29 1 3.7590 -6.1473 -0.8945 30 1 3.7615 -6.1478 0.8855 31 1 2.4961 -10.2869 0.8841 32 1 2.4952 -10.2856 -0.8958 33 1 2.8725 -12.6273 0.3096 34 1 3.9427 -12.8665 -1.1117 35 1 4.4677 -14.0089 1.3620 36 1 5.7619 -13.5446 0.2177 37 1 5.8507 -12.3238 2.5780 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884914017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:23 Heat of formation + Delta-G solvation = -145.433223 kcal Electronic energy + Delta-G solvation = -19640.899483 eV Core-core repulsion = 16315.670878 eV Total energy + Delta-G solvation = -3325.228605 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06648 -39.92098 -36.66914 -36.64564 -33.65489 -33.34030 -32.51312 -29.62803 -27.17370 -25.84051 -24.75148 -22.42342 -21.59812 -21.22663 -19.91007 -18.15263 -17.83662 -17.34444 -17.29171 -16.52446 -16.23069 -15.21451 -14.81774 -14.62014 -14.13320 -13.98743 -13.84631 -13.58169 -13.27542 -12.97227 -12.85411 -12.67000 -12.33571 -12.24412 -12.05527 -11.51324 -11.38191 -11.15577 -11.06302 -10.86497 -10.41999 -10.24864 -10.17660 -9.94914 -9.49123 -9.41355 -9.00036 -8.32343 -6.70965 -6.62428 -4.00738 2.28959 2.32009 2.61417 2.96035 3.29501 3.39814 3.42567 3.57963 3.85547 3.89183 4.17923 4.25579 4.45643 4.64864 4.78224 4.90325 4.96523 5.07456 5.13356 5.19381 5.20877 5.22886 5.28494 5.31602 5.49031 5.52073 5.74910 5.86936 6.12627 6.39995 6.43299 6.50089 6.63327 6.67182 7.83670 7.96405 7.98496 8.50601 9.27260 10.81939 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.052405 B = 0.002312 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.173711 B =12109.088541 C =12418.733955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.033 3.967 3 Si 1.087 2.913 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.280 1.280 7 C -0.589 4.589 8 H 0.067 0.933 9 S -0.182 6.182 10 C -0.091 4.091 11 C -0.099 4.099 12 C 0.075 3.925 13 O -0.360 6.360 14 C 0.453 3.547 15 O -0.485 6.485 16 C -0.096 4.096 17 C -0.116 4.116 18 H 0.119 0.881 19 C -0.129 4.129 20 C 0.102 3.898 21 N -0.741 5.741 22 C 0.517 3.483 23 O -0.502 6.502 24 H 0.277 0.723 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.222 -30.254 -0.906 31.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.177 4.177 3 Si 0.913 3.087 4 H -0.210 1.210 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.737 4.737 8 H 0.085 0.915 9 S 0.046 5.954 10 C -0.240 4.240 11 C -0.137 4.137 12 C 0.000 4.000 13 O -0.277 6.277 14 C 0.294 3.706 15 O -0.371 6.371 16 C -0.134 4.134 17 C -0.137 4.137 18 H 0.137 0.863 19 C -0.167 4.167 20 C -0.023 4.023 21 N -0.398 5.398 22 C 0.302 3.698 23 O -0.374 6.374 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 6.330 -28.072 -0.712 28.785 hybrid contribution 2.048 -1.470 0.368 2.547 sum 8.378 -29.541 -0.343 30.708 Atomic orbital electron populations 1.70780 1.06660 1.30903 1.43767 1.26103 0.96389 1.02214 0.93025 0.83276 0.74451 0.73845 0.77080 1.21025 1.21260 1.20502 1.23571 0.95743 0.91163 1.63218 0.91490 1.84142 1.12029 1.01849 1.97366 1.22980 1.01864 0.95476 1.03669 1.21304 0.96685 0.91540 1.04215 1.23170 0.97383 0.76810 1.02629 1.86436 1.40428 1.16827 1.84019 1.23344 0.84974 0.88612 0.73676 1.90721 1.18263 1.84733 1.43367 1.21190 0.98166 0.87626 1.06445 1.21833 0.97520 0.95606 0.98768 0.86326 1.22714 0.99713 0.92757 1.01520 1.22031 0.97473 0.90965 0.91786 1.46289 1.61017 1.07316 1.25221 1.20778 0.79079 0.83258 0.86715 1.90849 1.54134 1.30909 1.61524 0.91075 0.91470 0.91452 0.90394 0.90410 0.91265 0.91118 0.87515 0.86582 0.89337 0.88600 0.90095 0.91002 0.75184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.63 13.67 55.49 0.76 -26.88 16 2 C 0.03 0.96 5.49 -17.43 -0.10 0.87 16 3 Si 1.09 25.55 29.92 -169.99 -5.09 20.46 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.59 -17.39 9.50 30.94 0.29 -17.10 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.18 -4.80 20.46 -107.50 -2.20 -7.00 16 10 C -0.09 -1.90 5.67 37.16 0.21 -1.69 16 11 C -0.10 -1.70 5.60 -26.73 -0.15 -1.85 16 12 C 0.08 1.19 5.47 37.16 0.20 1.39 16 13 O -0.36 -5.30 10.22 -39.27 -0.40 -5.71 16 14 C 0.45 6.18 7.41 36.00 0.27 6.45 16 15 O -0.49 -8.25 13.62 -26.18 -0.36 -8.60 16 16 C -0.10 -0.78 5.21 -27.89 -0.15 -0.92 16 17 C -0.12 -0.85 2.55 -90.63 -0.23 -1.08 16 18 H 0.12 0.92 7.96 -51.93 -0.41 0.50 16 19 C -0.13 -0.38 6.70 -25.10 -0.17 -0.55 16 20 C 0.10 0.31 7.78 -3.12 -0.02 0.29 16 21 N -0.74 -4.95 6.25 -59.14 -0.37 -5.32 16 22 C 0.52 5.57 7.72 -10.75 -0.08 5.49 16 23 O -0.50 -8.20 15.40 -16.79 -0.26 -8.46 16 24 H 0.28 8.71 7.12 -40.82 -0.29 8.42 16 25 H 0.07 1.39 8.14 -51.92 -0.42 0.96 16 26 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.07 1.07 8.13 -51.93 -0.42 0.64 16 30 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.17 7.91 -51.92 -0.41 -0.24 16 34 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 35 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 36 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 37 H 0.41 2.30 8.96 -40.82 -0.37 1.93 16 LS Contribution 329.26 15.07 4.96 4.96 Total: -1.00 -38.22 329.26 -8.21 -46.43 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.34 Total: -1.18 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.71 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.39 Total: -32.19 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -1.02 Total: -22.77 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.09 Total: 20.46 kcal Atomic # 16 Polarization: -4.80 SS G_CDS: -2.20 Total: -7.00 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -38.22 -8.21 -46.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884914017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.004 kcal (2) G-P(sol) polarization free energy of solvation -38.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds