Wall clock time and date at job start Wed Apr 15 2020 11:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00477 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00494 * 3 2 1 6 6 H 1.48499 * 109.47352 * 330.00324 * 3 2 1 7 7 C 1.38798 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99738 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47049 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46888 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46674 * 180.02562 * 12 11 10 14 14 C 1.34235 * 116.99813 * 180.02562 * 13 12 11 15 15 O 1.20829 * 119.99934 * 359.97438 * 14 13 12 16 16 C 1.50693 * 119.99943 * 180.02562 * 14 13 12 17 17 C 1.53001 * 109.47374 * 179.97438 * 16 14 13 18 18 H 1.09001 * 110.43287 * 305.70431 * 17 16 14 19 19 C 1.54620 * 110.49195 * 183.15859 * 17 16 14 20 20 C 1.54477 * 101.76941 * 216.52686 * 19 17 16 21 21 N 1.46768 * 105.47289 * 25.41516 * 20 19 17 22 22 C 1.34663 * 111.33261 * 342.87097 * 21 20 19 23 23 O 1.21283 * 125.06506 * 180.52209 * 22 21 20 24 24 H 0.97005 * 119.99723 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47255 * 299.99975 * 10 9 7 26 26 H 1.09001 * 109.46783 * 60.00283 * 10 9 7 27 27 H 1.09000 * 109.47368 * 300.00269 * 11 10 9 28 28 H 1.09001 * 109.46801 * 60.00657 * 11 10 9 29 29 H 1.09000 * 109.47408 * 300.00333 * 12 11 10 30 30 H 1.09001 * 109.46790 * 60.00740 * 12 11 10 31 31 H 1.08995 * 109.47400 * 299.99691 * 16 14 13 32 32 H 1.09002 * 109.47525 * 59.99719 * 16 14 13 33 33 H 1.09010 * 110.96955 * 334.64204 * 19 17 16 34 34 H 1.09001 * 110.97130 * 98.36629 * 19 17 16 35 35 H 1.08998 * 110.24829 * 144.41086 * 20 19 17 36 36 H 1.08994 * 110.24690 * 266.41722 * 20 19 17 37 37 H 0.96995 * 124.35412 * 162.98283 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5477 1.4403 -0.7001 6 1 1.4477 2.6528 -0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9795 -5.3242 -0.0017 12 6 3.1516 -6.3076 -0.0037 13 8 2.6424 -7.6674 -0.0039 14 6 3.5489 -8.6575 -0.0051 15 8 4.7286 -8.3966 -0.0063 16 6 3.0950 -10.0945 -0.0059 17 6 4.3169 -11.0153 -0.0078 18 1 4.9789 -10.7675 -0.8376 19 6 3.8788 -12.4959 -0.0885 20 6 4.9252 -13.1840 0.8159 21 7 5.3785 -12.1463 1.7496 22 6 5.0570 -10.9155 1.3078 23 8 5.3202 -9.8790 1.8800 24 1 -0.4850 -0.8401 0.0004 25 1 3.1239 -3.7308 -0.8925 26 1 3.1252 -3.7316 0.8875 27 1 1.3718 -5.4844 0.8889 28 1 1.3700 -5.4842 -0.8911 29 1 3.7590 -6.1473 -0.8945 30 1 3.7615 -6.1478 0.8855 31 1 2.4961 -10.2869 0.8841 32 1 2.4952 -10.2856 -0.8958 33 1 2.8725 -12.6273 0.3096 34 1 3.9427 -12.8665 -1.1117 35 1 4.4677 -14.0089 1.3620 36 1 5.7619 -13.5446 0.2177 37 1 5.8507 -12.3238 2.5780 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884914017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:22 Heat of formation + Delta-G solvation = -172.159434 kcal Electronic energy + Delta-G solvation = -19642.058419 eV Core-core repulsion = 16315.670878 eV Total energy + Delta-G solvation = -3326.387540 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.88800 -40.84856 -37.82704 -37.40170 -35.06158 -34.73666 -34.07393 -30.15674 -28.33822 -27.23219 -26.50553 -22.93570 -22.77335 -22.36656 -20.63206 -20.29241 -18.74072 -18.16871 -18.12800 -17.60463 -17.20924 -16.58523 -16.12962 -15.78785 -15.66716 -15.00959 -14.88800 -14.74276 -14.62510 -14.23032 -14.02632 -13.61578 -13.44891 -13.18499 -12.92674 -12.81257 -12.63430 -12.45068 -12.41240 -11.97697 -11.91152 -11.60072 -11.55796 -11.30657 -11.13124 -10.75163 -10.46720 -10.03103 -8.96782 -8.90656 -6.31548 1.23414 1.27959 1.48031 1.56811 1.57633 1.75987 1.82301 2.29192 2.45610 2.97484 3.07400 3.35870 3.39720 3.70835 3.73157 3.83522 3.90462 4.03526 4.18941 4.25306 4.26511 4.41931 4.49892 4.52894 4.57036 4.79448 4.82814 4.88909 5.01153 5.11947 5.23762 5.49363 5.60811 5.93006 6.03575 6.14085 6.77104 7.01000 7.29770 8.47934 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.052405 B = 0.002312 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.173711 B =12109.088541 C =12418.733955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.017 4.017 3 Si 1.137 2.863 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.609 4.609 8 H 0.065 0.935 9 S -0.226 6.226 10 C -0.072 4.072 11 C -0.085 4.085 12 C 0.083 3.917 13 O -0.362 6.362 14 C 0.444 3.556 15 O -0.524 6.524 16 C -0.090 4.090 17 C -0.115 4.115 18 H 0.112 0.888 19 C -0.115 4.115 20 C 0.095 3.905 21 N -0.732 5.732 22 C 0.499 3.501 23 O -0.574 6.574 24 H 0.264 0.736 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.120 0.880 32 H 0.157 0.843 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.369 -32.612 -1.714 33.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.221 4.221 3 Si 0.955 3.045 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.756 4.756 8 H 0.083 0.917 9 S 0.002 5.998 10 C -0.221 4.221 11 C -0.123 4.123 12 C 0.007 3.993 13 O -0.279 6.279 14 C 0.288 3.712 15 O -0.412 6.412 16 C -0.127 4.127 17 C -0.137 4.137 18 H 0.130 0.870 19 C -0.152 4.152 20 C -0.028 4.028 21 N -0.387 5.387 22 C 0.286 3.714 23 O -0.452 6.452 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.138 0.862 32 H 0.174 0.826 33 H 0.124 0.876 34 H 0.142 0.858 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 6.463 -30.533 -1.530 31.247 hybrid contribution 2.055 -0.926 0.636 2.341 sum 8.517 -31.459 -0.894 32.603 Atomic orbital electron populations 1.70893 1.07676 1.30219 1.45674 1.27787 0.96459 1.06177 0.91667 0.82697 0.73899 0.69720 0.78208 1.19300 1.19369 1.19835 1.23936 0.95955 0.92715 1.63022 0.91717 1.84129 1.15483 1.02725 1.97479 1.22933 0.99475 0.95987 1.03744 1.21114 0.97077 0.89512 1.04594 1.22869 0.96328 0.77729 1.02339 1.86444 1.40866 1.16381 1.84222 1.24590 0.84425 0.90151 0.72069 1.90709 1.19934 1.85351 1.45158 1.21454 0.99011 0.83435 1.08842 1.21906 0.96846 0.98546 0.96374 0.86996 1.22811 1.00327 0.88783 1.03318 1.22395 0.98313 0.90494 0.91594 1.46438 1.59548 1.07190 1.25568 1.21523 0.78932 0.83270 0.87692 1.90802 1.57177 1.33508 1.63730 0.92507 0.91090 0.91592 0.90359 0.89673 0.90904 0.92184 0.86203 0.82579 0.87587 0.85775 0.87420 0.89610 0.74955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.35 13.67 21.65 0.30 -57.06 16 2 C -0.02 -1.02 5.49 84.86 0.47 -0.55 16 3 Si 1.14 50.79 29.92 68.60 2.05 52.85 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.61 -36.26 9.50 67.95 0.65 -35.62 16 8 H 0.06 3.77 7.80 -2.91 -0.02 3.75 16 9 S -0.23 -12.16 20.46 -56.49 -1.16 -13.31 16 10 C -0.07 -3.03 5.67 71.98 0.41 -2.62 16 11 C -0.08 -2.87 5.60 30.60 0.17 -2.70 16 12 C 0.08 2.61 5.47 71.98 0.39 3.01 16 13 O -0.36 -10.41 10.22 -51.47 -0.53 -10.93 16 14 C 0.44 11.92 7.41 71.23 0.53 12.44 16 15 O -0.52 -18.25 13.62 29.05 0.40 -17.85 16 16 C -0.09 -1.25 5.21 29.85 0.16 -1.09 16 17 C -0.12 -1.46 2.55 -10.80 -0.03 -1.49 16 18 H 0.11 1.58 7.96 -2.39 -0.02 1.56 16 19 C -0.12 -0.19 6.70 31.65 0.21 0.02 16 20 C 0.10 0.24 7.78 86.83 0.68 0.92 16 21 N -0.73 -8.78 6.25 -459.48 -2.87 -11.65 16 22 C 0.50 10.65 7.72 87.86 0.68 11.33 16 23 O -0.57 -19.72 15.40 18.33 0.28 -19.44 16 24 H 0.26 17.00 7.12 -92.70 -0.66 16.34 16 25 H 0.07 2.91 8.14 -2.40 -0.02 2.89 16 26 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 30 H 0.06 2.01 8.13 -2.39 -0.02 1.99 16 31 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.16 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 -0.13 7.91 -2.38 -0.02 -0.15 16 34 H 0.12 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.11 -0.22 8.14 -2.39 -0.02 -0.23 16 36 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.41 4.33 8.96 -92.71 -0.83 3.50 16 Total: -1.00 -87.07 329.26 3.14 -83.93 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.35 Total: 9.81 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 4.31 Total: -16.35 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -2.57 Total: -68.71 kcal Atomic # 8 Polarization: -48.37 SS G_CDS: 0.15 Total: -48.22 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.05 Total: 52.85 kcal Atomic # 16 Polarization: -12.16 SS G_CDS: -1.16 Total: -13.31 kcal Total: -87.07 3.14 -83.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884914017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.226 kcal (2) G-P(sol) polarization free energy of solvation -87.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds