Wall clock time and date at job start Wed Apr 15 2020 11:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34230 * 116.99718 * 2 1 4 4 O 1.20824 * 120.00265 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00092 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.64012 * 298.31698 * 5 3 2 7 7 C 1.55156 * 110.71518 * 61.45267 * 5 3 2 8 8 C 1.54918 * 101.58012 * 154.04502 * 7 5 3 9 9 N 1.47417 * 104.82849 * 322.99189 * 8 7 5 10 10 C 1.34780 * 125.64778 * 204.08766 * 9 8 7 11 11 O 1.21280 * 120.00423 * 180.02562 * 10 9 8 12 12 C 1.50701 * 119.99795 * 0.03047 * 10 9 8 13 13 S 1.81002 * 109.47156 * 179.97438 * 12 10 9 14 14 C 1.76193 * 100.00049 * 180.02562 * 13 12 10 15 15 H 1.08005 * 120.00026 * 359.97438 * 14 13 12 16 16 C 1.38806 * 120.00056 * 180.02562 * 14 13 12 17 17 N 1.31623 * 119.99640 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00053 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47315 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47332 * 119.99854 * 18 16 14 21 21 H 1.48499 * 109.47328 * 240.00154 * 18 16 14 22 22 C 1.47022 * 108.70718 * 24.35466 * 9 8 7 23 23 H 1.09000 * 109.88384 * 239.29111 * 22 9 8 24 24 C 1.53000 * 109.88107 * 118.12850 * 22 9 8 25 25 H 1.08995 * 109.46727 * 60.00268 * 1 2 3 26 26 H 1.09006 * 109.46670 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47003 * 300.00056 * 1 2 3 28 28 H 1.08998 * 111.00676 * 35.97564 * 7 5 3 29 29 H 1.09000 * 111.00862 * 272.11720 * 7 5 3 30 30 H 1.09003 * 110.36670 * 204.15269 * 8 7 5 31 31 H 1.08999 * 110.36757 * 81.82932 * 8 7 5 32 32 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 33 33 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 34 34 H 0.97010 * 119.99946 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.47448 * 61.46081 * 24 22 9 36 36 H 1.09006 * 109.47364 * 181.45868 * 24 22 9 37 37 H 1.09001 * 109.47307 * 301.45410 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9750 0.8121 0.8988 7 6 4.1513 0.6109 -1.2739 8 6 5.5004 1.3577 -1.4224 9 7 5.2114 2.7439 -1.0123 10 6 5.9064 3.8356 -1.3889 11 8 5.5777 4.9320 -0.9880 12 6 7.0920 3.6938 -2.3084 13 16 7.8072 5.3258 -2.6267 14 6 9.1330 4.8755 -3.6962 15 1 9.2885 3.8390 -3.9567 16 6 9.9784 5.8529 -4.2030 17 7 9.7892 7.1160 -3.8850 18 14 11.3845 5.3754 -5.3363 19 1 11.3813 3.9039 -5.5362 20 1 11.2165 6.0538 -6.6465 21 1 12.6739 5.7888 -4.7266 22 6 4.0436 2.7377 -0.1192 23 1 3.2490 3.3514 -0.5437 24 6 4.4391 3.2734 1.2583 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 3.5094 0.7886 -2.1367 29 1 4.3104 -0.4564 -1.1204 30 1 5.8367 1.3310 -2.4589 31 1 6.2520 0.9172 -0.7674 32 1 7.8401 3.0539 -1.8406 33 1 6.7704 3.2486 -3.2499 34 1 10.3798 7.7991 -4.2395 35 1 4.7858 4.3022 1.1623 36 1 3.5752 3.2417 1.9223 37 1 5.2379 2.6578 1.6719 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347202473.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:06 Heat of formation + Delta-G solvation = -119.908150 kcal Electronic energy + Delta-G solvation = -20508.552738 eV Core-core repulsion = 17184.430983 eV Total energy + Delta-G solvation = -3324.121754 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.14526 -39.68706 -37.39978 -36.60729 -32.44291 -32.40340 -31.55571 -29.10309 -28.11755 -26.36699 -25.48596 -23.04072 -22.71499 -20.62870 -19.07795 -18.10265 -17.60450 -17.19093 -16.71484 -16.19131 -15.93552 -14.96706 -14.80320 -14.36288 -14.06327 -14.03714 -13.77973 -13.45754 -13.05435 -12.81917 -12.72073 -12.55218 -12.37770 -12.07941 -11.79297 -11.68522 -11.25796 -11.16277 -11.07323 -11.01705 -10.98076 -10.75990 -10.64593 -9.80564 -9.36195 -9.07306 -8.54490 -8.22385 -6.49967 -6.21559 -3.92090 1.85706 2.23395 2.93747 3.06978 3.21707 3.26293 3.31281 3.60099 3.98456 4.13113 4.20477 4.40363 4.74294 4.77028 4.83498 4.91443 4.94893 5.05662 5.13689 5.17704 5.30201 5.37709 5.44939 5.50489 5.62090 5.66461 5.74494 5.90078 5.98126 6.08016 6.12964 6.26349 6.48188 7.39312 7.59772 7.65198 8.35460 8.56180 9.23773 10.85917 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.038972 B = 0.003229 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.295582 B = 8670.188369 C = 9053.048248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.497 6.497 5 C -0.095 4.095 6 H 0.125 0.875 7 C -0.119 4.119 8 C 0.100 3.900 9 N -0.624 5.624 10 C 0.550 3.450 11 O -0.510 6.510 12 C -0.147 4.147 13 S -0.060 6.060 14 C -0.534 4.534 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.148 3.852 23 H 0.093 0.907 24 C -0.162 4.162 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.382 -18.731 7.896 24.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.314 3.686 4 O -0.384 6.384 5 C -0.114 4.114 6 H 0.143 0.857 7 C -0.157 4.157 8 C -0.023 4.023 9 N -0.362 5.362 10 C 0.339 3.661 11 O -0.383 6.383 12 C -0.297 4.297 13 S 0.166 5.834 14 C -0.682 4.682 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.746 3.254 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.044 3.956 23 H 0.111 0.889 24 C -0.220 4.220 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.994 -16.520 8.439 23.852 hybrid contribution 1.027 -1.613 -1.158 2.236 sum -13.966 -18.133 7.281 24.018 Atomic orbital electron populations 1.23300 0.76106 1.03769 1.02748 1.86497 1.23551 1.33147 1.84127 1.23341 0.91458 0.81463 0.72329 1.90710 1.66883 1.36260 1.44511 1.22140 0.87772 0.98830 1.02688 0.85695 1.22802 0.96529 1.00487 0.95870 1.22328 0.96528 0.81730 1.01749 1.48591 1.31309 1.06905 1.49442 1.20020 0.83002 0.82496 0.80584 1.90707 1.67727 1.24959 1.54907 1.23518 0.97532 1.08259 1.00401 1.85431 1.35100 1.00370 1.62464 1.22896 1.15601 0.96212 1.33540 0.90877 1.24999 0.97719 0.94469 0.96448 1.70030 1.37604 0.99915 1.42698 0.86110 0.80872 0.78633 0.79832 1.19610 1.20576 1.20576 1.21321 0.89207 0.93029 0.92013 0.88889 1.22141 1.01379 1.03578 0.94882 0.91761 0.87970 0.91793 0.89934 0.88334 0.89570 0.90738 0.89215 0.89277 0.92231 0.90170 0.91911 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.12 10.55 -39.26 -0.41 -3.53 16 3 C 0.47 5.00 7.27 36.01 0.26 5.26 16 4 O -0.50 -6.87 15.24 -18.75 -0.29 -7.16 16 5 C -0.09 -0.88 2.97 -89.94 -0.27 -1.14 16 6 H 0.13 0.88 7.84 -51.93 -0.41 0.47 16 7 C -0.12 -0.92 6.51 -24.58 -0.16 -1.08 16 8 C 0.10 0.99 6.69 -2.53 -0.02 0.98 16 9 N -0.62 -9.05 3.06 -163.01 -0.50 -9.55 16 10 C 0.55 10.66 7.66 -10.98 -0.08 10.58 16 11 O -0.51 -11.87 14.91 5.56 0.08 -11.79 16 12 C -0.15 -2.99 5.16 36.01 0.19 -2.80 16 13 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 14 C -0.53 -15.19 9.50 30.94 0.29 -14.89 16 15 H 0.07 1.96 7.80 -52.48 -0.41 1.56 16 16 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 17 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 18 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.15 1.94 2.87 -66.95 -0.19 1.75 16 23 H 0.09 1.46 6.89 -51.93 -0.36 1.11 16 24 C -0.16 -2.08 9.11 37.16 0.34 -1.74 16 25 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 26 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 28 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.83 7.48 -51.93 -0.39 0.44 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 33 H 0.09 1.68 7.85 -51.91 -0.41 1.27 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.08 1.28 6.89 -51.93 -0.36 0.92 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 328.43 15.07 4.95 4.95 Total: -1.00 -35.83 328.43 -6.60 -42.43 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -5.26 Total: -2.53 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 1.33 Total: 0.18 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.23 Total: -35.02 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.62 Total: -22.48 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.83 -6.60 -42.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347202473.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.481 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds