Wall clock time and date at job start Wed Apr 15 2020 11:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34230 * 116.99718 * 2 1 4 4 O 1.20824 * 120.00265 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00092 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.64012 * 298.31698 * 5 3 2 7 7 C 1.55156 * 110.71518 * 61.45267 * 5 3 2 8 8 C 1.54918 * 101.58012 * 154.04502 * 7 5 3 9 9 N 1.47417 * 104.82849 * 322.99189 * 8 7 5 10 10 C 1.34780 * 125.64778 * 204.08766 * 9 8 7 11 11 O 1.21280 * 120.00423 * 180.02562 * 10 9 8 12 12 C 1.50701 * 119.99795 * 0.03047 * 10 9 8 13 13 S 1.81002 * 109.47156 * 179.97438 * 12 10 9 14 14 C 1.76193 * 100.00049 * 180.02562 * 13 12 10 15 15 H 1.08005 * 120.00026 * 359.97438 * 14 13 12 16 16 C 1.38806 * 120.00056 * 180.02562 * 14 13 12 17 17 N 1.31623 * 119.99640 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00053 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47315 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47332 * 119.99854 * 18 16 14 21 21 H 1.48499 * 109.47328 * 240.00154 * 18 16 14 22 22 C 1.47022 * 108.70718 * 24.35466 * 9 8 7 23 23 H 1.09000 * 109.88384 * 239.29111 * 22 9 8 24 24 C 1.53000 * 109.88107 * 118.12850 * 22 9 8 25 25 H 1.08995 * 109.46727 * 60.00268 * 1 2 3 26 26 H 1.09006 * 109.46670 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47003 * 300.00056 * 1 2 3 28 28 H 1.08998 * 111.00676 * 35.97564 * 7 5 3 29 29 H 1.09000 * 111.00862 * 272.11720 * 7 5 3 30 30 H 1.09003 * 110.36670 * 204.15269 * 8 7 5 31 31 H 1.08999 * 110.36757 * 81.82932 * 8 7 5 32 32 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 33 33 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 34 34 H 0.97010 * 119.99946 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.47448 * 61.46081 * 24 22 9 36 36 H 1.09006 * 109.47364 * 181.45868 * 24 22 9 37 37 H 1.09001 * 109.47307 * 301.45410 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9750 0.8121 0.8988 7 6 4.1513 0.6109 -1.2739 8 6 5.5004 1.3577 -1.4224 9 7 5.2114 2.7439 -1.0123 10 6 5.9064 3.8356 -1.3889 11 8 5.5777 4.9320 -0.9880 12 6 7.0920 3.6938 -2.3084 13 16 7.8072 5.3258 -2.6267 14 6 9.1330 4.8755 -3.6962 15 1 9.2885 3.8390 -3.9567 16 6 9.9784 5.8529 -4.2030 17 7 9.7892 7.1160 -3.8850 18 14 11.3845 5.3754 -5.3363 19 1 11.3813 3.9039 -5.5362 20 1 11.2165 6.0538 -6.6465 21 1 12.6739 5.7888 -4.7266 22 6 4.0436 2.7377 -0.1192 23 1 3.2490 3.3514 -0.5437 24 6 4.4391 3.2734 1.2583 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 3.5094 0.7886 -2.1367 29 1 4.3104 -0.4564 -1.1204 30 1 5.8367 1.3310 -2.4589 31 1 6.2520 0.9172 -0.7674 32 1 7.8401 3.0539 -1.8406 33 1 6.7704 3.2486 -3.2499 34 1 10.3798 7.7991 -4.2395 35 1 4.7858 4.3022 1.1623 36 1 3.5752 3.2417 1.9223 37 1 5.2379 2.6578 1.6719 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347202473.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:06 Heat of formation + Delta-G solvation = -144.330635 kcal Electronic energy + Delta-G solvation = -20509.611776 eV Core-core repulsion = 17184.430983 eV Total energy + Delta-G solvation = -3325.180793 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.02974 -40.83997 -38.59064 -37.48890 -34.58307 -33.61138 -32.47652 -30.49567 -28.91459 -27.66402 -27.19543 -24.15610 -23.51512 -21.51142 -20.37605 -19.60858 -18.87771 -18.09722 -17.71962 -17.21507 -17.06775 -16.87775 -16.44030 -15.79555 -15.36716 -15.00483 -14.70214 -14.43161 -14.39062 -14.11705 -13.80264 -13.76709 -13.27242 -13.15302 -13.06907 -12.90709 -12.82752 -12.67317 -12.54116 -12.07648 -11.89275 -11.80928 -11.70442 -11.50302 -11.15458 -10.91806 -10.26530 -9.75168 -8.67807 -8.34237 -6.12903 1.05490 1.19916 1.41212 1.42590 1.53967 1.57025 1.65003 2.13624 2.27744 3.00192 3.07375 3.30888 3.38943 3.69023 3.84600 4.04339 4.15954 4.19006 4.26682 4.29338 4.32283 4.33603 4.44899 4.53144 4.64776 4.72968 4.74923 4.96048 4.97036 5.09619 5.17873 5.28758 5.39408 5.42622 6.20576 6.36600 6.62807 7.06968 7.11437 8.75361 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.038972 B = 0.003229 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.295582 B = 8670.188369 C = 9053.048248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.476 3.524 4 O -0.539 6.539 5 C -0.084 4.084 6 H 0.160 0.840 7 C -0.106 4.106 8 C 0.088 3.912 9 N -0.615 5.615 10 C 0.546 3.454 11 O -0.563 6.563 12 C -0.118 4.118 13 S -0.156 6.156 14 C -0.542 4.542 15 H 0.085 0.915 16 C 0.011 3.989 17 N -0.913 5.913 18 Si 1.001 2.999 19 H -0.254 1.254 20 H -0.275 1.275 21 H -0.274 1.274 22 C 0.142 3.858 23 H 0.058 0.942 24 C -0.156 4.156 25 H 0.057 0.943 26 H 0.136 0.864 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.141 0.859 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.271 0.729 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.905 -22.973 7.664 27.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.319 3.681 4 O -0.429 6.429 5 C -0.103 4.103 6 H 0.178 0.822 7 C -0.143 4.143 8 C -0.034 4.034 9 N -0.351 5.351 10 C 0.335 3.665 11 O -0.441 6.441 12 C -0.269 4.269 13 S 0.071 5.929 14 C -0.690 4.690 15 H 0.103 0.897 16 C -0.193 4.193 17 N -0.549 5.549 18 Si 0.823 3.177 19 H -0.177 1.177 20 H -0.201 1.201 21 H -0.200 1.200 22 C 0.038 3.962 23 H 0.077 0.923 24 C -0.214 4.214 25 H 0.076 0.924 26 H 0.154 0.846 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.159 0.841 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.541 -20.851 8.214 26.714 hybrid contribution 0.719 -0.398 -1.022 1.311 sum -13.822 -21.248 7.192 26.349 Atomic orbital electron populations 1.23581 0.74743 1.05904 1.02386 1.86487 1.24836 1.31773 1.83473 1.23565 0.91915 0.81385 0.71190 1.90712 1.67837 1.37734 1.46575 1.22108 0.87079 0.95902 1.05189 0.82240 1.22856 0.94589 1.02326 0.94579 1.22791 0.98736 0.79007 1.02829 1.48508 1.30461 1.07715 1.48401 1.19832 0.83176 0.83016 0.80493 1.90690 1.69189 1.27351 1.56911 1.23305 0.98157 1.03544 1.01863 1.85669 1.36606 1.07376 1.63201 1.23222 1.15518 0.96858 1.33405 0.89685 1.26168 1.00794 0.94235 0.98134 1.70202 1.39090 1.01380 1.44274 0.84871 0.76608 0.79140 0.77104 1.17740 1.20071 1.19973 1.21362 0.87725 0.95707 0.91385 0.92349 1.22067 1.02538 1.01516 0.95266 0.92394 0.84556 0.92025 0.90593 0.84105 0.88922 0.87880 0.86974 0.87395 0.92030 0.94191 0.90492 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.35 -5.10 10.55 -51.42 -0.54 -5.64 16 3 C 0.48 9.17 7.27 71.24 0.52 9.68 16 4 O -0.54 -14.88 15.24 21.97 0.33 -14.54 16 5 C -0.08 -1.29 2.97 -10.35 -0.03 -1.32 16 6 H 0.16 1.44 7.84 -2.39 -0.02 1.42 16 7 C -0.11 -1.19 6.51 31.99 0.21 -0.98 16 8 C 0.09 1.41 6.69 86.86 0.58 2.00 16 9 N -0.62 -17.13 3.06 -788.04 -2.41 -19.54 16 10 C 0.55 21.44 7.66 87.66 0.67 22.11 16 11 O -0.56 -27.73 14.91 -3.03 -0.05 -27.78 16 12 C -0.12 -4.75 5.16 71.24 0.37 -4.38 16 13 S -0.16 -8.78 20.57 -56.49 -1.16 -9.95 16 14 C -0.54 -30.94 9.50 67.96 0.65 -30.29 16 15 H 0.09 4.47 7.80 -2.91 -0.02 4.45 16 16 C 0.01 0.64 5.49 84.86 0.47 1.10 16 17 N -0.91 -56.52 13.22 21.65 0.29 -56.24 16 18 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 19 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 20 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 C 0.14 3.64 2.87 45.34 0.13 3.77 16 23 H 0.06 1.93 6.89 -2.39 -0.02 1.91 16 24 C -0.16 -3.97 9.11 71.98 0.66 -3.32 16 25 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 26 H 0.14 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 28 H 0.08 1.00 8.04 -2.39 -0.02 0.98 16 29 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 1.43 7.48 -2.39 -0.02 1.42 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 33 H 0.11 3.92 7.85 -2.40 -0.02 3.90 16 34 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 35 H 0.04 1.34 6.89 -2.39 -0.02 1.33 16 36 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -83.63 328.43 4.96 -78.67 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.06 Total: 9.65 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 5.41 Total: -0.14 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -2.13 Total: -75.78 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -0.25 Total: -47.96 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.95 kcal Total: -83.63 4.96 -78.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347202473.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.662 kcal (2) G-P(sol) polarization free energy of solvation -83.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds