Wall clock time and date at job start Wed Apr 15 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.49491 * 2 1 4 4 C 1.53034 * 109.49556 * 239.90236 * 2 1 3 5 5 C 1.53044 * 109.53641 * 178.68425 * 4 2 1 6 6 H 1.09006 * 109.52405 * 301.39711 * 5 4 2 7 7 C 1.50697 * 109.50131 * 181.31337 * 5 4 2 8 8 O 1.20833 * 119.99747 * 0.16448 * 7 5 4 9 9 O 1.34230 * 120.00262 * 179.88070 * 7 5 4 10 10 C 1.53195 * 109.31442 * 61.36100 * 5 4 2 11 11 N 1.46926 * 108.77547 * 305.36692 * 10 5 4 12 12 C 1.34774 * 120.63166 * 233.62593 * 11 10 5 13 13 O 1.21277 * 120.00121 * 179.97438 * 12 11 10 14 14 C 1.50705 * 119.99668 * 0.02562 * 12 11 10 15 15 S 1.81005 * 109.46640 * 179.97438 * 14 12 11 16 16 C 1.76207 * 99.99728 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00025 * 359.97438 * 16 15 14 18 18 C 1.38797 * 120.00048 * 180.02562 * 16 15 14 19 19 N 1.31629 * 120.00028 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99774 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47194 * 89.99966 * 20 18 16 22 22 H 1.48503 * 109.47053 * 209.99615 * 20 18 16 23 23 H 1.48495 * 109.47389 * 329.99873 * 20 18 16 24 24 C 1.46923 * 118.73830 * 53.60924 * 11 10 5 25 25 H 1.09002 * 109.46781 * 299.93812 * 1 2 3 26 26 H 1.08996 * 109.47204 * 59.93568 * 1 2 3 27 27 H 1.08996 * 109.46908 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46523 * 58.66184 * 4 2 1 29 29 H 1.08997 * 109.45919 * 298.69676 * 4 2 1 30 30 H 0.96699 * 116.99771 * 180.27188 * 9 7 5 31 31 H 1.09000 * 109.58602 * 65.15424 * 10 5 4 32 32 H 1.08994 * 109.58937 * 185.43580 * 10 5 4 33 33 H 1.08996 * 109.46886 * 299.99378 * 14 12 11 34 34 H 1.09001 * 109.47364 * 60.00174 * 14 12 11 35 35 H 0.96999 * 119.99519 * 180.02562 * 19 18 16 36 36 H 1.08999 * 109.59251 * 66.17625 * 24 11 10 37 37 H 1.09000 * 109.58609 * 186.60266 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7234 -1.2481 5 6 3.5708 -0.6954 -1.2658 6 1 3.9164 0.3384 -1.2544 7 6 4.0722 -1.3797 -2.5113 8 8 3.2865 -1.8401 -3.3055 9 8 5.3914 -1.4729 -2.7412 10 6 4.1053 -1.4266 -0.0303 11 7 3.5046 -0.8287 1.1699 12 6 4.2811 -0.3849 2.1781 13 8 3.7732 0.1072 3.1633 14 6 5.7807 -0.4990 2.0806 15 16 6.5360 0.1795 3.5791 16 6 8.2391 -0.0745 3.2052 17 1 8.5241 -0.5326 2.2695 18 6 9.2143 0.3130 4.1135 19 7 10.4866 0.1228 3.8344 20 14 8.7213 1.1033 5.7328 21 1 8.5343 0.0488 6.7616 22 1 9.7874 2.0394 6.1716 23 1 7.4504 1.8498 5.5526 24 6 2.0414 -0.7234 1.2499 25 1 -0.3633 0.5129 0.8906 26 1 -0.3633 0.5148 -0.8894 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6582 -0.2252 -2.1388 29 1 1.6968 -1.7576 -1.2347 30 1 5.6648 -1.9170 -3.5555 31 1 3.8376 -2.4818 -0.0859 32 1 5.1898 -1.3267 0.0129 33 1 6.0591 -1.5476 1.9758 34 1 6.1319 0.0588 1.2125 35 1 11.1681 0.3933 4.4695 36 1 1.6052 -1.7211 1.2986 37 1 1.7638 -0.1572 2.1390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398967812.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:16 Heat of formation + Delta-G solvation = -139.306105 kcal Electronic energy + Delta-G solvation = -20778.540262 eV Core-core repulsion = 17453.577349 eV Total energy + Delta-G solvation = -3324.962913 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.99211 -39.77026 -37.56623 -36.36916 -34.06927 -32.53472 -32.44463 -29.74003 -26.87199 -25.72836 -25.33087 -24.74455 -21.27863 -20.55098 -19.31689 -18.29020 -17.74755 -17.05533 -16.56618 -16.27385 -15.80514 -15.18688 -15.00410 -14.80400 -14.47325 -13.95981 -13.71219 -13.46065 -13.30865 -12.93002 -12.78863 -12.41444 -12.29286 -12.03258 -11.83076 -11.65418 -11.28597 -11.18423 -11.11458 -11.01783 -10.97831 -10.74221 -10.59418 -9.87198 -9.54080 -9.01593 -8.73543 -8.51253 -6.93965 -6.29960 -4.02064 1.85575 2.55437 2.75895 2.86198 3.16057 3.32360 3.49438 3.56173 4.18614 4.31635 4.37992 4.45068 4.56693 4.65855 4.81792 5.01837 5.04285 5.09235 5.12758 5.25277 5.33793 5.35819 5.45939 5.51022 5.61378 5.70216 5.74202 5.84206 5.89270 5.95826 6.05808 6.21454 6.42976 7.33519 7.59526 7.93096 8.34589 8.40813 9.16262 10.79253 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.020775 B = 0.004365 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.435682 B = 6412.625320 C = 7610.945299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.079 0.921 4 C -0.098 4.098 5 C -0.098 4.098 6 H 0.117 0.883 7 C 0.488 3.512 8 O -0.514 6.514 9 O -0.510 6.510 10 C 0.119 3.881 11 N -0.618 5.618 12 C 0.536 3.464 13 O -0.514 6.514 14 C -0.124 4.124 15 S -0.142 6.142 16 C -0.521 4.521 17 H 0.089 0.911 18 C 0.097 3.903 19 N -0.880 5.880 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.114 3.886 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.412 0.588 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.271 0.729 36 H 0.067 0.933 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.526 -2.889 -12.673 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 H 0.097 0.903 4 C -0.136 4.136 5 C -0.118 4.118 6 H 0.135 0.865 7 C 0.330 3.670 8 O -0.402 6.402 9 O -0.322 6.322 10 C -0.005 4.005 11 N -0.354 5.354 12 C 0.324 3.676 13 O -0.388 6.388 14 C -0.275 4.275 15 S 0.084 5.916 16 C -0.669 4.669 17 H 0.107 0.893 18 C -0.112 4.112 19 N -0.517 5.517 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.008 4.008 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.271 0.729 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.409 -2.071 -10.980 20.686 hybrid contribution 0.987 -0.608 -1.198 1.667 sum -16.422 -2.679 -12.177 20.619 Atomic orbital electron populations 1.21732 0.93819 1.02255 1.02291 1.21528 0.96421 1.00362 0.94268 0.90256 1.21520 0.91103 1.02376 0.98589 1.21492 0.98025 1.01929 0.90372 0.86501 1.23263 0.80065 0.76267 0.87416 1.90724 1.56944 1.45138 1.47414 1.84585 1.25959 1.73947 1.47670 1.21596 0.99921 0.96578 0.82417 1.48027 1.06520 1.62697 1.18106 1.20326 0.88813 0.76552 0.81916 1.90695 1.75010 1.42789 1.30293 1.23340 0.93116 1.05647 1.05353 1.84803 1.04898 1.80133 1.21733 1.22306 0.88345 1.47348 1.08861 0.89326 1.24701 0.94028 0.94300 0.98190 1.69937 0.99481 1.45711 1.36527 0.86747 0.80544 0.80771 0.83859 1.19205 1.19938 1.15931 1.21686 0.79352 1.00826 0.98980 0.92027 0.92194 0.92324 0.90536 0.90619 0.72899 0.90697 0.87690 0.88424 0.88302 0.91933 0.91474 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.20 37.16 0.34 -0.66 16 2 C -0.11 -0.92 2.87 -90.50 -0.26 -1.18 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.10 -0.83 3.74 -26.69 -0.10 -0.93 16 5 C -0.10 -0.89 2.78 -91.65 -0.25 -1.15 16 6 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 7 C 0.49 4.71 7.63 36.00 0.27 4.98 16 8 O -0.51 -6.20 16.74 -18.76 -0.31 -6.51 16 9 O -0.51 -4.16 13.36 -39.26 -0.52 -4.69 16 10 C 0.12 1.22 5.55 -3.71 -0.02 1.20 16 11 N -0.62 -7.93 2.97 -172.77 -0.51 -8.44 16 12 C 0.54 9.33 7.72 -10.98 -0.08 9.24 16 13 O -0.51 -10.78 15.27 5.56 0.08 -10.69 16 14 C -0.12 -2.34 4.50 36.01 0.16 -2.18 16 15 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 16 C -0.52 -14.78 10.04 30.94 0.31 -14.47 16 17 H 0.09 2.62 8.03 -52.49 -0.42 2.19 16 18 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 19 N -0.88 -26.30 13.97 55.49 0.78 -25.52 16 20 Si 0.86 21.56 27.74 -169.99 -4.72 16.84 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 24 C 0.11 1.23 5.72 -3.71 -0.02 1.21 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 29 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 30 H 0.41 1.66 9.10 45.56 0.41 2.07 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 1.12 5.94 -51.93 -0.31 0.81 16 33 H 0.10 1.72 7.94 -51.92 -0.41 1.31 16 34 H 0.10 1.73 7.70 -51.91 -0.40 1.33 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.22 7.00 -51.93 -0.36 0.85 16 LS Contribution 322.01 15.07 4.85 4.85 Total: -1.00 -34.89 322.01 -6.54 -41.43 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -4.45 Total: -0.49 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 0.25 Total: -1.24 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.26 Total: -33.96 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.75 Total: -21.89 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.72 Total: 16.84 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.89 -6.54 -41.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398967812.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.877 kcal (2) G-P(sol) polarization free energy of solvation -34.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds