Wall clock time and date at job start Wed Apr 15 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.49491 * 2 1 4 4 C 1.53034 * 109.49556 * 239.90236 * 2 1 3 5 5 C 1.53044 * 109.53641 * 178.68425 * 4 2 1 6 6 H 1.09006 * 109.52405 * 301.39711 * 5 4 2 7 7 C 1.50697 * 109.50131 * 181.31337 * 5 4 2 8 8 O 1.20833 * 119.99747 * 0.16448 * 7 5 4 9 9 O 1.34230 * 120.00262 * 179.88070 * 7 5 4 10 10 C 1.53195 * 109.31442 * 61.36100 * 5 4 2 11 11 N 1.46926 * 108.77547 * 305.36692 * 10 5 4 12 12 C 1.34774 * 120.63166 * 233.62593 * 11 10 5 13 13 O 1.21277 * 120.00121 * 179.97438 * 12 11 10 14 14 C 1.50705 * 119.99668 * 0.02562 * 12 11 10 15 15 S 1.81005 * 109.46640 * 179.97438 * 14 12 11 16 16 C 1.76207 * 99.99728 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00025 * 359.97438 * 16 15 14 18 18 C 1.38797 * 120.00048 * 180.02562 * 16 15 14 19 19 N 1.31629 * 120.00028 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99774 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47194 * 89.99966 * 20 18 16 22 22 H 1.48503 * 109.47053 * 209.99615 * 20 18 16 23 23 H 1.48495 * 109.47389 * 329.99873 * 20 18 16 24 24 C 1.46923 * 118.73830 * 53.60924 * 11 10 5 25 25 H 1.09002 * 109.46781 * 299.93812 * 1 2 3 26 26 H 1.08996 * 109.47204 * 59.93568 * 1 2 3 27 27 H 1.08996 * 109.46908 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46523 * 58.66184 * 4 2 1 29 29 H 1.08997 * 109.45919 * 298.69676 * 4 2 1 30 30 H 0.96699 * 116.99771 * 180.27188 * 9 7 5 31 31 H 1.09000 * 109.58602 * 65.15424 * 10 5 4 32 32 H 1.08994 * 109.58937 * 185.43580 * 10 5 4 33 33 H 1.08996 * 109.46886 * 299.99378 * 14 12 11 34 34 H 1.09001 * 109.47364 * 60.00174 * 14 12 11 35 35 H 0.96999 * 119.99519 * 180.02562 * 19 18 16 36 36 H 1.08999 * 109.59251 * 66.17625 * 24 11 10 37 37 H 1.09000 * 109.58609 * 186.60266 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7234 -1.2481 5 6 3.5708 -0.6954 -1.2658 6 1 3.9164 0.3384 -1.2544 7 6 4.0722 -1.3797 -2.5113 8 8 3.2865 -1.8401 -3.3055 9 8 5.3914 -1.4729 -2.7412 10 6 4.1053 -1.4266 -0.0303 11 7 3.5046 -0.8287 1.1699 12 6 4.2811 -0.3849 2.1781 13 8 3.7732 0.1072 3.1633 14 6 5.7807 -0.4990 2.0806 15 16 6.5360 0.1795 3.5791 16 6 8.2391 -0.0745 3.2052 17 1 8.5241 -0.5326 2.2695 18 6 9.2143 0.3130 4.1135 19 7 10.4866 0.1228 3.8344 20 14 8.7213 1.1033 5.7328 21 1 8.5343 0.0488 6.7616 22 1 9.7874 2.0394 6.1716 23 1 7.4504 1.8498 5.5526 24 6 2.0414 -0.7234 1.2499 25 1 -0.3633 0.5129 0.8906 26 1 -0.3633 0.5148 -0.8894 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6582 -0.2252 -2.1388 29 1 1.6968 -1.7576 -1.2347 30 1 5.6648 -1.9170 -3.5555 31 1 3.8376 -2.4818 -0.0859 32 1 5.1898 -1.3267 0.0129 33 1 6.0591 -1.5476 1.9758 34 1 6.1319 0.0588 1.2125 35 1 11.1681 0.3933 4.4695 36 1 1.6052 -1.7211 1.2986 37 1 1.7638 -0.1572 2.1390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398967812.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:16 Heat of formation + Delta-G solvation = -163.484496 kcal Electronic energy + Delta-G solvation = -20779.588715 eV Core-core repulsion = 17453.577349 eV Total energy + Delta-G solvation = -3326.011367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.85208 -40.83866 -38.61937 -37.12808 -35.02489 -34.65313 -33.39416 -31.12524 -27.89921 -27.57828 -26.35463 -25.61468 -22.00914 -21.48070 -20.49704 -19.57435 -19.03056 -18.30584 -17.42565 -17.34255 -17.06256 -16.80446 -16.37652 -15.78376 -15.64417 -15.23474 -14.91920 -14.69449 -14.51016 -14.25443 -13.65910 -13.58955 -13.32600 -13.09980 -13.03124 -12.98757 -12.57545 -12.55590 -12.37071 -11.98018 -11.90457 -11.84251 -11.69460 -11.50806 -11.15646 -10.94693 -10.50699 -9.81136 -8.98748 -8.49916 -6.20782 0.96753 1.09529 1.32663 1.46471 1.48733 1.54111 1.89876 2.17703 2.26362 2.68928 2.88653 3.43473 3.47157 3.65606 3.81933 3.87892 4.07564 4.19281 4.33215 4.36236 4.40774 4.45608 4.62200 4.66999 4.70942 4.82700 4.89154 5.04786 5.16018 5.27980 5.34275 5.49728 5.59320 5.72627 6.13370 6.14831 6.95523 6.96673 7.02764 8.62426 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.020775 B = 0.004365 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.435682 B = 6412.625320 C = 7610.945299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 H 0.071 0.929 4 C -0.093 4.093 5 C -0.095 4.095 6 H 0.121 0.879 7 C 0.497 3.503 8 O -0.539 6.539 9 O -0.512 6.512 10 C 0.115 3.885 11 N -0.604 5.604 12 C 0.538 3.462 13 O -0.556 6.556 14 C -0.110 4.110 15 S -0.175 6.175 16 C -0.527 4.527 17 H 0.064 0.936 18 C 0.048 3.952 19 N -0.917 5.917 20 Si 0.912 3.088 21 H -0.263 1.263 22 H -0.260 1.260 23 H -0.237 1.237 24 C 0.110 3.890 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.430 0.570 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.277 0.723 36 H 0.086 0.914 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.995 -3.158 -13.504 22.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.090 0.910 4 C -0.130 4.130 5 C -0.115 4.115 6 H 0.138 0.862 7 C 0.340 3.660 8 O -0.429 6.429 9 O -0.326 6.326 10 C -0.008 4.008 11 N -0.337 5.337 12 C 0.326 3.674 13 O -0.434 6.434 14 C -0.261 4.261 15 S 0.051 5.949 16 C -0.675 4.675 17 H 0.082 0.918 18 C -0.158 4.158 19 N -0.555 5.555 20 Si 0.734 3.266 21 H -0.187 1.187 22 H -0.184 1.184 23 H -0.160 1.160 24 C -0.011 4.011 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.292 0.708 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.878 -2.363 -11.868 22.423 hybrid contribution 1.407 -0.613 -1.116 1.898 sum -17.471 -2.976 -12.984 21.970 Atomic orbital electron populations 1.21716 0.92306 1.03009 1.02746 1.21449 0.97564 0.99529 0.93137 0.91050 1.21486 0.90489 1.02572 0.98487 1.21453 0.98540 1.01892 0.89585 0.86151 1.23189 0.80203 0.75552 0.87066 1.90724 1.57606 1.46268 1.48287 1.84552 1.25130 1.73947 1.48927 1.21785 0.99760 0.97609 0.81694 1.47969 1.07242 1.60963 1.17538 1.19989 0.88209 0.76745 0.82448 1.90683 1.75384 1.45168 1.32192 1.23318 0.94191 1.06208 1.02334 1.84725 1.02950 1.81157 1.26037 1.22449 0.90493 1.46628 1.07903 0.91802 1.25525 0.94041 0.94860 1.01357 1.70014 1.00512 1.46978 1.37985 0.85898 0.80437 0.80214 0.80018 1.18749 1.18423 1.16040 1.21896 0.77796 1.01998 0.99439 0.92129 0.91233 0.91437 0.90042 0.90270 0.70813 0.88804 0.87960 0.86941 0.86775 0.91397 0.89540 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.20 71.98 0.66 -0.96 16 2 C -0.10 -1.47 2.87 -10.72 -0.03 -1.50 16 3 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.09 -1.33 3.74 30.62 0.11 -1.21 16 5 C -0.09 -1.50 2.78 -11.46 -0.03 -1.53 16 6 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 7 C 0.50 8.44 7.63 71.23 0.54 8.99 16 8 O -0.54 -11.84 16.74 21.94 0.37 -11.47 16 9 O -0.51 -7.20 13.36 -51.41 -0.69 -7.89 16 10 C 0.11 2.07 5.55 86.36 0.48 2.55 16 11 N -0.60 -14.39 2.97 -818.91 -2.43 -16.82 16 12 C 0.54 18.20 7.72 87.66 0.68 18.87 16 13 O -0.56 -23.20 15.27 -3.02 -0.05 -23.25 16 14 C -0.11 -4.04 4.50 71.24 0.32 -3.72 16 15 S -0.18 -8.72 18.55 -56.49 -1.05 -9.77 16 16 C -0.53 -30.21 10.04 67.95 0.68 -29.53 16 17 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 18 C 0.05 2.76 5.50 84.86 0.47 3.23 16 19 N -0.92 -55.28 13.97 21.65 0.30 -54.98 16 20 Si 0.91 44.51 27.74 68.60 1.90 46.42 16 21 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.24 -11.51 6.74 99.48 0.67 -10.84 16 24 C 0.11 2.18 5.72 86.36 0.49 2.68 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.08 1.14 8.07 -2.39 -0.02 1.13 16 29 H 0.08 1.12 8.13 -2.39 -0.02 1.10 16 30 H 0.43 2.52 9.10 -74.06 -0.67 1.84 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.10 1.94 5.94 -2.39 -0.01 1.93 16 33 H 0.11 3.81 7.94 -2.40 -0.02 3.79 16 34 H 0.11 3.86 7.70 -2.40 -0.02 3.84 16 35 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.91 7.00 -2.39 -0.02 1.90 16 Total: -1.00 -74.99 322.01 3.11 -71.88 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.37 Total: 8.02 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 4.38 Total: -2.14 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -2.13 Total: -71.80 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -0.37 Total: -42.61 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.90 Total: 46.42 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.05 Total: -9.77 kcal Total: -74.99 3.11 -71.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398967812.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.601 kcal (2) G-P(sol) polarization free energy of solvation -74.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds