Wall clock time and date at job start Wed Apr 15 2020 11:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.46815 * 2 1 4 4 C 1.34232 * 116.99707 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99801 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99899 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.87315 * 59.30215 * 6 4 3 8 8 C 1.54327 * 110.01199 * 298.20198 * 6 4 3 9 9 C 1.55153 * 102.94211 * 218.31889 * 8 6 4 10 10 C 1.54908 * 101.58630 * 35.49999 * 9 8 6 11 11 N 1.47022 * 109.88348 * 180.31860 * 6 4 3 12 12 C 1.34778 * 125.64436 * 298.47604 * 11 6 4 13 13 O 1.21284 * 120.00229 * 0.02562 * 12 11 6 14 14 C 1.50699 * 119.99870 * 179.97438 * 12 11 6 15 15 S 1.80993 * 109.47346 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00205 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00478 * 359.97438 * 16 15 14 18 18 C 1.38804 * 119.99876 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00317 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99773 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47452 * 59.99586 * 20 18 16 22 22 H 1.48499 * 109.47009 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46842 * 299.99384 * 20 18 16 24 24 H 1.08996 * 109.47571 * 60.00429 * 1 2 3 25 25 H 1.09009 * 109.46764 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47419 * 300.00113 * 1 2 3 27 27 H 1.09000 * 109.47419 * 239.99887 * 2 1 3 28 28 H 1.08999 * 109.46966 * 119.99991 * 2 1 3 29 29 H 1.09006 * 110.71875 * 336.68223 * 8 6 4 30 30 H 1.09003 * 110.72034 * 99.95259 * 8 6 4 31 31 H 1.09006 * 111.00338 * 277.42810 * 9 8 6 32 32 H 1.08997 * 111.03848 * 153.59537 * 9 8 6 33 33 H 1.08992 * 110.36921 * 204.15530 * 10 9 8 34 34 H 1.09001 * 110.45822 * 81.87204 * 10 9 8 35 35 H 1.08996 * 109.47515 * 300.00645 * 14 12 11 36 36 H 1.09008 * 109.47268 * 60.00284 * 14 12 11 37 37 H 0.96994 * 120.00165 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5783 3.4804 0.8810 8 6 3.4899 3.6866 -1.2786 9 6 4.7598 4.4962 -1.6515 10 6 5.8861 3.5175 -1.2353 11 7 5.3894 2.8711 -0.0070 12 6 6.1549 2.3125 0.9514 13 8 5.6360 1.8069 1.9241 14 6 7.6556 2.3151 0.8138 15 16 8.3945 1.4971 2.2493 16 6 10.1018 1.6400 1.8378 17 1 10.3972 2.1260 0.9197 18 6 11.0672 1.1270 2.6931 19 7 10.7073 0.5342 3.8118 20 14 12.8772 1.2791 2.2570 21 1 13.2369 2.7142 2.1297 22 1 13.6980 0.6566 3.3266 23 1 13.1357 0.5878 0.9685 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.2349 2.9825 -2.0708 30 1 2.6538 4.3545 -1.0711 31 1 4.8152 5.4220 -1.0786 32 1 4.7942 4.6991 -2.7219 33 1 6.8069 4.0637 -1.0308 34 1 6.0519 2.7739 -2.0148 35 1 7.9382 1.7813 -0.0935 36 1 8.0135 3.3432 0.7569 37 1 11.3819 0.1754 4.4093 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042715489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:06 Heat of formation + Delta-G solvation = -144.515255 kcal Electronic energy + Delta-G solvation = -20684.432797 eV Core-core repulsion = 17359.243999 eV Total energy + Delta-G solvation = -3325.188799 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.07632 -40.56859 -38.45425 -37.60566 -34.60994 -33.32677 -32.63024 -31.16568 -29.96579 -27.69266 -25.58386 -24.12318 -22.85519 -22.17324 -20.58916 -19.65691 -19.05832 -18.29974 -17.78088 -17.40220 -16.92173 -16.84725 -16.25259 -15.97034 -15.29535 -15.27150 -14.66923 -14.47628 -14.23159 -14.09418 -13.82415 -13.58760 -13.29475 -13.16272 -13.05198 -12.87805 -12.80119 -12.65386 -12.53322 -12.18720 -11.86484 -11.76404 -11.59865 -11.45384 -11.14610 -11.05333 -10.32183 -9.91483 -8.71662 -8.36232 -6.16113 1.07506 1.11125 1.30555 1.43381 1.44471 1.54055 1.74119 2.05667 2.25484 2.97603 3.19128 3.40490 3.43310 3.73670 3.82774 3.93099 4.03459 4.05045 4.14294 4.23045 4.28711 4.38148 4.47377 4.72159 4.75698 4.81631 4.88652 4.89615 5.07911 5.10061 5.22148 5.30108 5.38844 5.38951 6.17366 6.24102 6.64566 7.03900 7.05024 8.73129 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.025009 B = 0.003838 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.311249 B = 7294.540156 C = 8121.718851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 O -0.352 6.352 4 C 0.446 3.554 5 O -0.533 6.533 6 C 0.139 3.861 7 H 0.118 0.882 8 C -0.103 4.103 9 C -0.115 4.115 10 C 0.082 3.918 11 N -0.608 5.608 12 C 0.551 3.449 13 O -0.558 6.558 14 C -0.116 4.116 15 S -0.154 6.154 16 C -0.547 4.547 17 H 0.084 0.916 18 C 0.012 3.988 19 N -0.913 5.913 20 Si 1.003 2.997 21 H -0.259 1.259 22 H -0.278 1.278 23 H -0.262 1.262 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.129 0.871 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.663 9.597 -16.280 26.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.268 6.268 4 C 0.288 3.712 5 O -0.421 6.421 6 C 0.033 3.967 7 H 0.135 0.865 8 C -0.141 4.141 9 C -0.152 4.152 10 C -0.039 4.039 11 N -0.344 5.344 12 C 0.340 3.660 13 O -0.435 6.435 14 C -0.267 4.267 15 S 0.073 5.927 16 C -0.695 4.695 17 H 0.102 0.898 18 C -0.192 4.192 19 N -0.549 5.549 20 Si 0.824 3.176 21 H -0.183 1.183 22 H -0.203 1.203 23 H -0.187 1.187 24 H 0.099 0.901 25 H 0.116 0.884 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.148 0.852 31 H 0.115 0.885 32 H 0.141 0.859 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.133 0.867 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.145 8.406 -14.634 25.521 hybrid contribution 1.783 -0.352 -0.585 1.909 sum -17.362 8.054 -15.219 24.453 Atomic orbital electron populations 1.21799 0.89333 1.04426 1.04133 1.23270 0.97688 0.79455 1.01780 1.86468 1.23161 1.33372 1.83839 1.24699 0.81103 0.93697 0.71654 1.90720 1.61432 1.44321 1.45620 1.21526 0.80985 0.88875 1.05267 0.86492 1.22702 1.00474 0.98979 0.91962 1.22862 0.90469 0.97247 1.04652 1.22820 1.00222 0.96205 0.84620 1.48387 1.04988 1.58459 1.22559 1.19839 0.88479 0.76246 0.81431 1.90676 1.75060 1.45248 1.32526 1.23272 0.93488 1.05890 1.04059 1.85646 1.04337 1.76080 1.26603 1.23163 0.91008 1.44720 1.10583 0.89762 1.26195 1.05325 0.93635 0.94082 1.70189 1.36322 1.36645 1.11729 0.84950 0.75175 0.79295 0.78228 1.18294 1.20321 1.18690 0.90130 0.88417 0.91298 0.91406 0.93266 0.89586 0.85233 0.88504 0.85902 0.88740 0.90790 0.88158 0.86715 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 10.29 71.98 0.74 -1.13 16 2 C 0.05 1.16 6.19 71.98 0.45 1.61 16 3 O -0.35 -8.96 10.19 -51.44 -0.52 -9.48 16 4 C 0.45 13.99 6.78 71.24 0.48 14.47 16 5 O -0.53 -22.21 14.79 26.99 0.40 -21.81 16 6 C 0.14 3.42 3.36 44.60 0.15 3.57 16 7 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 8 C -0.10 -1.24 6.45 31.78 0.20 -1.04 16 9 C -0.11 -1.09 7.08 31.98 0.23 -0.86 16 10 C 0.08 1.55 6.69 86.85 0.58 2.13 16 11 N -0.61 -18.27 2.84 -792.19 -2.25 -20.52 16 12 C 0.55 23.39 7.03 87.66 0.62 24.01 16 13 O -0.56 -29.11 15.13 10.62 0.16 -28.95 16 14 C -0.12 -5.08 5.16 71.24 0.37 -4.71 16 15 S -0.15 -9.07 20.57 -56.49 -1.16 -10.23 16 16 C -0.55 -32.32 9.50 67.96 0.65 -31.67 16 17 H 0.08 4.58 7.80 -2.91 -0.02 4.56 16 18 C 0.01 0.72 5.49 84.86 0.47 1.18 16 19 N -0.91 -57.66 13.22 21.65 0.29 -57.37 16 20 Si 1.00 44.45 29.55 68.60 2.03 46.47 16 21 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 27 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 28 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 29 H 0.09 1.00 7.85 -2.38 -0.02 0.98 16 30 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.09 1.64 7.47 -2.39 -0.02 1.63 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.10 4.13 8.14 -2.40 -0.02 4.11 16 36 H 0.11 4.37 7.85 -2.39 -0.02 4.35 16 37 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -88.65 330.48 4.92 -83.73 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.06 Total: 10.61 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 4.93 Total: 7.57 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -1.97 Total: -77.90 kcal Atomic # 8 Polarization: -60.28 SS G_CDS: 0.04 Total: -60.24 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.16 Total: -10.23 kcal Total: -88.65 4.92 -83.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042715489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.790 kcal (2) G-P(sol) polarization free energy of solvation -88.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds