Wall clock time and date at job start Wed Apr 15 2020 11:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34783 * 119.99487 * 2 1 4 4 O 1.21279 * 120.00123 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99670 * 179.97438 * 3 2 1 6 6 C 1.50701 * 115.55091 * 325.58317 * 5 3 2 7 7 O 1.20825 * 120.00071 * 214.42013 * 6 5 3 8 8 O 1.34233 * 120.00152 * 34.41557 * 6 5 3 9 9 C 1.45194 * 116.99930 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46979 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 12 12 S 1.81000 * 109.47293 * 179.97438 * 11 10 9 13 13 C 1.76202 * 100.00020 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00485 * 359.97438 * 13 12 11 15 15 C 1.38806 * 119.99444 * 179.97438 * 13 12 11 16 16 N 1.31629 * 120.00213 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99465 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47494 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46982 * 120.00256 * 17 15 13 20 20 H 1.48501 * 109.47125 * 240.00112 * 17 15 13 21 21 C 1.52992 * 117.49939 * 111.25392 * 5 3 2 22 22 C 1.52997 * 117.49796 * 179.91460 * 5 3 2 23 23 H 1.08994 * 109.47414 * 299.99513 * 1 2 3 24 24 H 1.08999 * 109.47417 * 60.00337 * 1 2 3 25 25 H 1.09007 * 109.46705 * 180.02562 * 1 2 3 26 26 H 0.97000 * 120.00326 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47510 * 60.00620 * 9 8 6 28 28 H 1.09001 * 109.47429 * 300.00326 * 9 8 6 29 29 H 1.09001 * 109.47002 * 299.99655 * 10 9 8 30 30 H 1.08993 * 109.46955 * 60.00092 * 10 9 8 31 31 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 32 32 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 33 33 H 0.97001 * 119.99673 * 179.97438 * 16 15 13 34 34 H 1.09001 * 117.50110 * 215.00279 * 21 5 3 35 35 H 1.08999 * 117.49859 * 0.02562 * 21 5 3 36 36 H 1.09002 * 117.49958 * 359.97438 * 22 5 3 37 37 H 1.09002 * 117.50203 * 144.99830 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1674 0.0006 6 6 4.2956 0.0459 0.7696 7 8 5.3347 0.2379 1.3555 8 8 3.7199 -1.1662 0.8037 9 6 4.4013 -2.1984 1.5642 10 6 3.6017 -3.5006 1.4869 11 6 4.3194 -4.5881 2.2888 12 16 3.3731 -6.1284 2.1980 13 6 4.3976 -7.1751 3.1775 14 1 5.3042 -6.7859 3.6166 15 6 4.0394 -8.5001 3.3846 16 7 2.9347 -8.9746 2.8490 17 14 5.1259 -9.6099 4.4224 18 1 6.3009 -8.8410 4.9057 19 1 4.3519 -10.1133 5.5855 20 1 5.5885 -10.7577 3.6015 21 6 4.3527 1.6590 -1.2640 22 6 4.3522 2.5245 -0.0015 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.9501 -0.8400 0.0004 27 1 4.4875 -1.8859 2.6048 28 1 5.3965 -2.3583 1.1492 29 1 2.6064 -3.3410 1.9017 30 1 3.5158 -3.8130 0.4462 31 1 5.3148 -4.7479 1.8745 32 1 4.4049 -4.2755 3.3295 33 1 2.6846 -9.9006 2.9935 34 1 5.2877 1.1714 -1.5399 35 1 3.7278 1.9829 -2.0963 36 1 3.7269 3.4173 -0.0037 37 1 5.2869 2.6063 0.5533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805445522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:34 Heat of formation + Delta-G solvation = -130.001203 kcal Electronic energy + Delta-G solvation = -19981.656992 eV Core-core repulsion = 16657.097570 eV Total energy + Delta-G solvation = -3324.559422 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 287.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.22143 -40.63536 -38.47351 -36.93555 -35.69542 -34.89757 -34.58077 -29.21257 -28.12274 -27.50152 -25.67639 -23.64519 -23.18527 -22.65008 -21.11761 -19.80045 -19.45752 -18.21045 -17.86830 -17.07697 -16.90005 -16.89326 -16.31578 -16.08752 -15.88566 -15.47523 -15.24129 -14.66230 -14.18459 -13.91718 -13.88834 -13.82674 -13.19230 -13.06470 -12.97360 -12.65849 -12.58632 -12.54371 -12.45182 -12.40142 -11.87006 -11.73601 -11.56677 -11.46042 -11.16143 -11.09063 -10.35223 -10.19774 -8.66801 -8.38742 -6.14176 0.73321 1.07990 1.32450 1.38238 1.42713 1.50921 1.78234 2.11678 2.26681 2.54084 2.96271 3.23862 3.32501 3.36813 3.64700 3.71334 3.85177 3.95273 4.13968 4.32670 4.38336 4.48274 4.54886 4.59349 4.61490 4.68883 4.80608 4.92489 5.02259 5.03478 5.06323 5.29485 5.34434 5.40447 6.17724 6.38335 6.45117 7.04629 7.06696 8.70605 Molecular weight = 287.10amu Principal moments of inertia in cm(-1) A = 0.030365 B = 0.002881 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.879476 B = 9715.002911 C =10434.929394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.718 5.718 3 C 0.552 3.448 4 O -0.566 6.566 5 C -0.202 4.202 6 C 0.506 3.494 7 O -0.517 6.517 8 O -0.354 6.354 9 C 0.082 3.918 10 C -0.087 4.087 11 C -0.094 4.094 12 S -0.180 6.180 13 C -0.540 4.540 14 H 0.073 0.927 15 C 0.017 3.983 16 N -0.906 5.906 17 Si 0.992 3.008 18 H -0.263 1.263 19 H -0.273 1.273 20 H -0.272 1.272 21 C -0.097 4.097 22 C -0.107 4.107 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.417 0.583 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.272 0.728 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 19.563 -8.320 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.372 5.372 3 C 0.338 3.662 4 O -0.446 6.446 5 C -0.206 4.206 6 C 0.350 3.650 7 O -0.406 6.406 8 O -0.270 6.270 9 C 0.007 3.993 10 C -0.125 4.125 11 C -0.243 4.243 12 S 0.048 5.952 13 C -0.688 4.688 14 H 0.091 0.909 15 C -0.188 4.188 16 N -0.542 5.542 17 Si 0.814 3.186 18 H -0.187 1.187 19 H -0.198 1.198 20 H -0.197 1.197 21 C -0.134 4.134 22 C -0.144 4.144 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.257 0.743 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.434 19.871 -8.676 21.687 hybrid contribution 1.748 -1.207 1.538 2.623 sum 1.315 18.664 -7.138 20.025 Atomic orbital electron populations 1.21762 0.78116 1.04303 1.02086 1.46074 1.08896 1.08966 1.73247 1.19163 0.87258 0.84067 0.75749 1.90693 1.69734 1.32307 1.51827 1.21184 0.92590 0.97239 1.09620 1.22241 0.82432 0.82494 0.77876 1.90683 1.24063 1.83117 1.42720 1.86176 1.53023 1.20096 1.67738 1.23157 0.96094 0.84446 0.95603 1.21138 0.99391 0.90093 1.01893 1.23078 1.01861 0.97017 1.02339 1.84575 1.36425 1.04964 1.69210 1.23092 1.10825 0.98298 1.36596 0.90866 1.26020 0.96981 0.98764 0.97056 1.70140 1.24173 1.16223 1.43682 0.84997 0.78105 0.77682 0.77792 1.18739 1.19797 1.19708 1.23402 1.01403 0.98797 0.89804 1.23308 1.01371 0.89971 0.99730 0.92740 0.91782 0.87871 0.74338 0.90816 0.90089 0.89971 0.89531 0.91254 0.91540 0.91925 0.85295 0.85022 0.85705 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.70 127.77 1.37 2.67 16 2 N -0.72 -13.97 5.53 -484.51 -2.68 -16.65 16 3 C 0.55 12.45 7.38 87.66 0.65 13.10 16 4 O -0.57 -15.81 16.26 -3.02 -0.05 -15.86 16 5 C -0.20 -3.87 2.56 -53.68 -0.14 -4.01 16 6 C 0.51 11.58 7.49 71.24 0.53 12.11 16 7 O -0.52 -14.19 16.01 21.97 0.35 -13.84 16 8 O -0.35 -7.76 7.31 -51.45 -0.38 -8.14 16 9 C 0.08 1.94 5.47 71.98 0.39 2.33 16 10 C -0.09 -2.38 5.60 30.60 0.17 -2.20 16 11 C -0.09 -3.43 5.67 71.98 0.41 -3.02 16 12 S -0.18 -9.04 21.44 -56.49 -1.21 -10.25 16 13 C -0.54 -30.17 9.50 67.96 0.65 -29.52 16 14 H 0.07 3.95 7.80 -2.91 -0.02 3.93 16 15 C 0.02 0.94 5.49 84.86 0.47 1.41 16 16 N -0.91 -53.18 13.22 21.65 0.29 -52.89 16 17 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 C -0.10 -1.20 9.94 30.62 0.30 -0.90 16 22 C -0.11 -1.65 9.56 30.62 0.29 -1.35 16 23 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.42 7.57 5.99 -92.71 -0.56 7.01 16 27 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16 28 H 0.08 1.85 8.13 -2.39 -0.02 1.83 16 29 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 30 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 34 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.12 1.90 7.67 -2.39 -0.02 1.89 16 37 H 0.12 1.84 7.67 -2.39 -0.02 1.82 16 Total: -1.00 -70.47 336.99 3.97 -66.51 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.52 Total: 15.57 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 5.09 Total: -9.40 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: -2.39 Total: -69.54 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.07 Total: -37.84 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -1.21 Total: -10.25 kcal Total: -70.47 3.97 -66.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805445522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.495 kcal (2) G-P(sol) polarization free energy of solvation -70.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds