Wall clock time and date at job start Wed Apr 15 2020 11:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35032 * 124.88336 * 2 1 4 4 C 1.35365 * 107.22479 * 180.29854 * 3 2 1 5 5 C 1.41503 * 105.50294 * 359.61004 * 4 3 2 6 6 C 1.47718 * 126.51400 * 180.13004 * 5 4 3 7 7 O 1.21563 * 120.00088 * 353.45882 * 6 5 4 8 8 N 1.34776 * 119.99402 * 173.45571 * 6 5 4 9 9 C 1.47078 * 120.87803 * 183.74725 * 8 6 5 10 10 C 1.53702 * 108.27907 * 128.75780 * 9 8 6 11 11 N 1.46893 * 109.25471 * 54.07844 * 10 9 8 12 12 C 1.46900 * 110.99870 * 172.60901 * 11 10 9 13 13 C 1.50696 * 109.47202 * 294.30532 * 12 11 10 14 14 H 1.07992 * 120.00324 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99674 * 180.02562 * 13 12 11 16 16 N 1.31505 * 120.00116 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99420 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46967 * 90.00261 * 17 15 13 19 19 H 1.48506 * 109.46904 * 209.99754 * 17 15 13 20 20 H 1.48491 * 109.47598 * 329.99842 * 17 15 13 21 21 C 1.46902 * 111.27261 * 296.76112 * 11 10 9 22 22 C 1.47076 * 120.88448 * 4.02744 * 8 6 5 23 23 N 1.28469 * 124.88053 * 180.02562 * 2 1 3 24 24 H 1.09007 * 109.47361 * 89.99607 * 1 2 3 25 25 H 1.08999 * 109.47323 * 210.00051 * 1 2 3 26 26 H 1.09001 * 109.46807 * 329.99587 * 1 2 3 27 27 H 1.08000 * 126.38805 * 0.04032 * 3 2 1 28 28 H 1.08003 * 127.24491 * 179.69887 * 4 3 2 29 29 H 1.09000 * 109.63060 * 248.52340 * 9 8 6 30 30 H 1.09005 * 109.63049 * 9.10442 * 9 8 6 31 31 H 1.09001 * 109.64472 * 294.08300 * 10 9 8 32 32 H 1.08994 * 109.41930 * 173.94997 * 10 9 8 33 33 H 1.08997 * 109.46997 * 54.30547 * 12 11 10 34 34 H 1.09003 * 109.47125 * 174.30326 * 12 11 10 35 35 H 0.97009 * 119.99735 * 179.97438 * 16 15 13 36 36 H 1.08993 * 109.48956 * 303.14294 * 21 11 10 37 37 H 1.09007 * 109.51347 * 183.07804 * 21 11 10 38 38 H 1.09004 * 109.63012 * 350.89389 * 22 8 6 39 39 H 1.09001 * 109.62883 * 111.47562 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1077 0.0000 4 6 3.5271 0.6971 -0.0067 5 6 3.4739 -0.7169 -0.0014 6 6 4.6273 -1.6399 -0.0028 7 8 5.7548 -1.2035 -0.1289 8 7 4.4293 -2.9658 0.1358 9 6 5.5670 -3.8942 0.2192 10 6 5.3730 -4.7844 1.4571 11 7 4.0528 -5.4250 1.3910 12 6 3.8954 -6.4181 2.4619 13 6 4.8636 -7.5518 2.2421 14 1 5.5290 -7.5364 1.3917 15 6 4.8991 -8.6093 3.1262 16 7 4.0885 -8.6283 4.1615 17 14 6.0989 -10.0148 2.8532 18 1 7.3779 -9.7154 3.5459 19 1 5.5228 -11.2703 3.3985 20 1 6.3497 -10.1762 1.3986 21 6 2.9742 -4.4287 1.4342 22 6 3.0699 -3.5234 0.2015 23 7 2.1997 -1.0539 -0.0005 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.8905 2.1305 0.0006 28 1 4.4108 1.3180 -0.0132 29 1 5.6019 -4.5122 -0.6780 30 1 6.4944 -3.3294 0.3145 31 1 5.4374 -4.1764 2.3594 32 1 6.1484 -5.5502 1.4778 33 1 4.0976 -5.9492 3.4248 34 1 2.8760 -6.8040 2.4526 35 1 4.1132 -9.3725 4.7833 36 1 3.0720 -3.8257 2.3368 37 1 2.0095 -4.9363 1.4386 38 1 2.3455 -2.7132 0.2851 39 1 2.8694 -4.1064 -0.6974 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602208493.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:52:07 Heat of formation + Delta-G solvation = 74.976719 kcal Electronic energy + Delta-G solvation = -21720.787118 eV Core-core repulsion = 18473.286851 eV Total energy + Delta-G solvation = -3247.500267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.80736 -39.56137 -37.34213 -34.38186 -33.62657 -32.34545 -31.18652 -30.41425 -28.49674 -27.39154 -25.46100 -23.59723 -22.68959 -21.83532 -21.41692 -20.29560 -18.86389 -17.37878 -16.69122 -16.46655 -16.29807 -15.59050 -14.88985 -14.69052 -14.35848 -14.12522 -13.83701 -13.71349 -13.48816 -13.25182 -13.16225 -12.85700 -12.60320 -12.22421 -11.97672 -11.34219 -11.15727 -10.80474 -10.72781 -10.64790 -10.48060 -10.23072 -9.89958 -9.64648 -9.42098 -9.21442 -9.16998 -8.44967 -8.30901 -7.23733 -6.02359 -4.03808 1.50886 2.02219 2.24249 3.24878 3.33103 3.39207 3.43770 3.52017 4.13676 4.43456 4.55431 4.64701 4.72181 4.94945 5.00305 5.08469 5.33452 5.45470 5.50987 5.55683 5.62952 5.77462 5.82347 5.93907 6.00419 6.10675 6.35434 6.38432 6.54356 6.59713 6.67590 6.91486 7.29113 7.34262 7.59957 7.79338 7.82362 8.07686 8.18920 8.36899 8.54317 9.03766 9.60581 11.08526 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032099 B = 0.003832 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.092162 B = 7305.150507 C = 7953.328925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.291 5.291 3 C -0.018 4.018 4 C -0.180 4.180 5 C -0.004 4.004 6 C 0.597 3.403 7 O -0.545 6.545 8 N -0.592 5.592 9 C 0.115 3.885 10 C 0.052 3.948 11 N -0.536 5.536 12 C 0.193 3.807 13 C -0.508 4.508 14 H 0.064 0.936 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.044 3.956 22 C 0.083 3.917 23 N -0.260 5.260 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.181 0.819 28 H 0.162 0.838 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.024 0.976 32 H 0.097 0.903 33 H -0.010 1.010 34 H 0.031 0.969 35 H 0.261 0.739 36 H 0.023 0.977 37 H 0.078 0.922 38 H 0.131 0.869 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.407 19.301 -8.317 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.078 5.078 3 C -0.161 4.161 4 C -0.208 4.208 5 C -0.164 4.164 6 C 0.384 3.616 7 O -0.421 6.421 8 N -0.324 5.324 9 C -0.007 4.007 10 C -0.077 4.077 11 N -0.262 5.262 12 C 0.068 3.932 13 C -0.547 4.547 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.086 4.086 22 C -0.040 4.040 23 N -0.095 5.095 24 H 0.103 0.897 25 H 0.117 0.883 26 H 0.113 0.887 27 H 0.198 0.802 28 H 0.180 0.820 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.042 0.958 32 H 0.115 0.885 33 H 0.008 0.992 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.096 0.904 38 H 0.148 0.852 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.753 18.251 -8.671 22.021 hybrid contribution 0.924 0.200 0.843 1.267 sum -7.829 18.451 -7.827 21.518 Atomic orbital electron populations 1.22193 0.73307 1.05569 1.04467 1.45669 1.07870 1.03347 1.50880 1.22846 0.91003 0.93689 1.08547 1.21769 0.97342 0.93487 1.08239 1.22058 0.90605 0.94259 1.09490 1.17012 0.86473 0.81234 0.76924 1.90752 1.23020 1.76781 1.51556 1.48073 1.08923 1.05282 1.70138 1.22007 0.88648 0.90598 0.99468 1.22413 0.94179 0.96539 0.94554 1.62090 1.00233 1.13414 1.50433 1.19721 0.97872 0.89070 0.86506 1.21162 1.19683 1.04045 1.09767 0.91767 1.24992 0.96080 0.98402 0.95116 1.69960 1.37952 1.31976 1.13967 0.86498 0.80949 0.81493 0.78493 1.20725 1.21295 1.19713 1.22375 0.96856 0.93662 0.95693 1.22822 0.83390 0.99056 0.98782 1.73277 1.03146 1.12731 1.20354 0.89672 0.88340 0.88695 0.80160 0.82042 0.90754 0.89357 0.95768 0.88500 0.99197 0.95104 0.92937 0.95885 0.90354 0.85233 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 11.31 59.85 0.68 1.05 16 2 N -0.29 -2.73 3.70 -68.12 -0.25 -2.98 16 3 C -0.02 -0.15 11.46 -17.17 -0.20 -0.35 16 4 C -0.18 -2.14 10.81 -39.36 -0.43 -2.57 16 5 C 0.00 -0.07 6.90 -82.76 -0.57 -0.64 16 6 C 0.60 10.49 7.71 -12.39 -0.10 10.40 16 7 O -0.54 -10.74 16.40 5.31 0.09 -10.65 16 8 N -0.59 -10.33 3.00 -173.34 -0.52 -10.85 16 9 C 0.11 2.05 6.62 -3.36 -0.02 2.02 16 10 C 0.05 1.06 5.47 -3.46 -0.02 1.05 16 11 N -0.54 -11.79 4.62 -235.47 -1.09 -12.88 16 12 C 0.19 5.08 4.72 -4.98 -0.02 5.05 16 13 C -0.51 -14.26 8.41 -34.44 -0.29 -14.55 16 14 H 0.06 1.77 7.13 -52.49 -0.37 1.40 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 17 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.04 0.81 5.62 -3.70 -0.02 0.79 16 22 C 0.08 1.35 6.45 -3.60 -0.02 1.32 16 23 N -0.26 -3.38 8.33 33.42 0.28 -3.10 16 24 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.09 0.16 8.13 -51.93 -0.42 -0.26 16 27 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 28 H 0.16 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.09 1.54 7.08 -51.93 -0.37 1.17 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 2.06 6.67 -51.93 -0.35 1.71 16 33 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 34 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 1.40 7.99 -51.92 -0.41 0.98 16 38 H 0.13 1.93 3.84 -105.17 -0.40 1.53 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 321.34 15.07 4.84 4.84 Total: -1.00 -34.62 321.34 -7.73 -42.35 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -5.68 Total: -2.39 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -1.11 Total: 5.06 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.85 Total: -55.88 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.62 -7.73 -42.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208493.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.323 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds