Wall clock time and date at job start Wed Apr 15 2020 11:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99866 * 2 1 4 4 O 1.21604 * 120.00079 * 185.67230 * 3 2 1 5 5 C 1.47429 * 120.00210 * 5.67202 * 3 2 1 6 6 C 1.41284 * 126.41191 * 6.80664 * 5 3 2 7 7 N 1.30452 * 108.02381 * 179.85567 * 6 5 3 8 8 N 1.39934 * 108.89410 * 0.40554 * 7 6 5 9 9 C 1.46501 * 125.75516 * 179.73461 * 8 7 6 10 10 C 1.34260 * 108.49436 * 359.74196 * 8 7 6 11 11 C 1.46500 * 119.99940 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.91440 * 176.09760 * 11 2 1 13 13 C 1.55160 * 111.00318 * 299.99839 * 11 2 1 14 14 C 1.54323 * 102.93940 * 82.57223 * 13 11 2 15 15 N 1.47029 * 107.27104 * 22.19422 * 14 13 11 16 16 C 1.36934 * 125.64587 * 181.02003 * 15 14 13 17 17 H 1.08002 * 120.00149 * 185.94012 * 16 15 14 18 18 C 1.38812 * 120.00303 * 5.94500 * 16 15 14 19 19 N 1.31624 * 120.00012 * 7.60809 * 18 16 15 20 20 Si 1.86798 * 120.00183 * 187.88955 * 18 16 15 21 21 H 1.48508 * 109.46992 * 264.73631 * 20 18 16 22 22 H 1.48492 * 109.47347 * 24.73537 * 20 18 16 23 23 H 1.48500 * 109.47387 * 144.74214 * 20 18 16 24 24 C 1.47423 * 108.70415 * 1.28350 * 15 14 13 25 25 H 1.08997 * 109.47055 * 275.63608 * 1 2 3 26 26 H 1.09004 * 109.46790 * 35.62739 * 1 2 3 27 27 H 1.08994 * 109.47379 * 155.63372 * 1 2 3 28 28 H 1.08002 * 125.99290 * 359.97438 * 6 5 3 29 29 H 1.08999 * 109.47184 * 270.00463 * 9 8 7 30 30 H 1.08998 * 109.47244 * 30.00507 * 9 8 7 31 31 H 1.08997 * 109.47152 * 150.00642 * 9 8 7 32 32 H 1.07994 * 126.29817 * 179.97438 * 10 8 7 33 33 H 1.08998 * 110.71952 * 324.21262 * 13 11 2 34 34 H 1.08994 * 110.71518 * 200.93293 * 13 11 2 35 35 H 1.08995 * 109.88702 * 262.77123 * 14 13 11 36 36 H 1.09007 * 109.88105 * 141.60601 * 14 13 11 37 37 H 0.96997 * 120.00288 * 180.27732 * 19 18 16 38 38 H 1.08998 * 110.36279 * 94.48082 * 24 15 14 39 39 H 1.08998 * 110.36671 * 216.80636 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3505 1.1698 -0.1041 5 6 1.4072 2.4409 0.1262 6 6 0.0271 2.5929 0.3879 7 7 -0.2378 3.8696 0.4282 8 7 0.9408 4.5848 0.1884 9 6 1.0628 6.0440 0.1449 10 6 1.9410 3.7082 0.0048 11 6 2.1975 -1.2687 0.0006 12 1 3.2718 -1.0978 -0.0688 13 6 1.8484 -2.1119 1.2554 14 6 0.5311 -2.8060 0.8498 15 7 0.4794 -2.8197 -0.6195 16 6 -0.5403 -3.3305 -1.3774 17 1 -0.4422 -3.3800 -2.4518 18 6 -1.7003 -3.7845 -0.7648 19 7 -1.8841 -3.5886 0.5237 20 14 -2.9970 -4.6803 -1.7676 21 1 -4.0364 -3.7153 -2.2078 22 1 -2.3613 -5.3003 -2.9578 23 1 -3.6242 -5.7374 -0.9343 24 6 1.7100 -2.1982 -1.1417 25 1 -0.3633 0.1009 1.0227 26 1 -0.3633 0.8354 -0.5987 27 1 -0.3634 -0.9361 -0.4240 28 1 -0.6836 1.7924 0.5315 29 1 0.8961 6.3923 -0.8744 30 1 0.3212 6.4906 0.8072 31 1 2.0618 6.3350 0.4694 32 1 2.9733 3.9499 -0.2004 33 1 1.6944 -1.4685 2.1217 34 1 2.6271 -2.8483 1.4540 35 1 -0.3184 -2.2494 1.2455 36 1 0.5177 -3.8273 1.2307 37 1 -2.6928 -3.9093 0.9526 38 1 2.4577 -2.9612 -1.3583 39 1 1.4906 -1.6159 -2.0366 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032895086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:52:37 Heat of formation + Delta-G solvation = 101.656785 kcal Electronic energy + Delta-G solvation = -22233.795074 eV Core-core repulsion = 18987.451742 eV Total energy + Delta-G solvation = -3246.343333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.37519 -39.32872 -37.22665 -34.40351 -33.36672 -32.06558 -30.26733 -29.32820 -28.09187 -26.83697 -26.12825 -24.40275 -22.53295 -21.17514 -20.15099 -20.04569 -18.81639 -17.20582 -16.85941 -16.19505 -15.73503 -15.51515 -14.74577 -14.66587 -14.31482 -13.96321 -13.80270 -13.13190 -13.04014 -12.92367 -12.60869 -12.42693 -11.95627 -11.92030 -11.59880 -11.15914 -11.05261 -10.89843 -10.82142 -10.68936 -10.14997 -10.08605 -9.91280 -9.67907 -9.57913 -9.28552 -8.70253 -8.65734 -8.04305 -6.81115 -5.74004 -3.10956 1.57615 2.29735 2.31845 3.38214 3.45354 3.46597 3.51333 3.73784 4.38556 4.47605 4.73285 4.86178 5.00039 5.11834 5.14656 5.40549 5.46249 5.49124 5.53999 5.67772 5.79370 5.81931 5.95892 6.15958 6.28322 6.38996 6.46790 6.58120 6.59851 6.69660 6.76237 6.91368 7.22545 7.47569 7.55541 7.64020 7.79646 7.99099 8.22061 8.65861 9.17311 9.77489 10.43142 11.34261 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023393 B = 0.004815 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.668158 B = 5814.160515 C = 6541.753539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.581 5.581 3 C 0.589 3.411 4 O -0.567 6.567 5 C -0.283 4.283 6 C 0.068 3.932 7 N -0.305 5.305 8 N -0.371 5.371 9 C 0.099 3.901 10 C 0.119 3.881 11 C 0.125 3.875 12 H 0.099 0.901 13 C -0.155 4.155 14 C 0.166 3.834 15 N -0.601 5.601 16 C -0.232 4.232 17 H 0.077 0.923 18 C -0.004 4.004 19 N -0.916 5.916 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.282 1.282 23 H -0.291 1.291 24 C 0.124 3.876 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.133 0.867 28 H 0.212 0.788 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.186 0.814 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.027 0.973 37 H 0.253 0.747 38 H 0.032 0.968 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.863 15.150 0.797 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.311 5.311 3 C 0.379 3.621 4 O -0.449 6.449 5 C -0.298 4.298 6 C -0.118 4.118 7 N -0.125 5.125 8 N -0.150 5.150 9 C -0.042 4.042 10 C -0.032 4.032 11 C 0.021 3.979 12 H 0.117 0.883 13 C -0.194 4.194 14 C 0.042 3.958 15 N -0.328 5.328 16 C -0.360 4.360 17 H 0.095 0.905 18 C -0.201 4.201 19 N -0.564 5.564 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.207 1.207 23 H -0.217 1.217 24 C -0.003 4.003 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.151 0.849 28 H 0.228 0.772 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.203 0.797 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.352 16.087 0.946 16.980 hybrid contribution -0.177 -1.096 -0.533 1.231 sum 5.174 14.991 0.414 15.865 Atomic orbital electron populations 1.22810 0.78856 1.07024 1.01054 1.47408 1.07471 1.04759 1.71490 1.17288 0.86181 0.82646 0.75992 1.90697 1.13841 1.87512 1.52805 1.20326 0.94574 0.93648 1.21204 1.25307 0.95839 0.94364 0.96318 1.77231 1.05276 1.05511 1.24498 1.48435 1.06084 1.06975 1.53476 1.21926 1.04083 0.74382 1.03841 1.22898 0.94946 0.88791 0.96530 1.22247 0.96203 0.82505 0.96941 0.88272 1.23232 1.00640 0.98699 0.96854 1.21340 0.92571 0.98050 0.83858 1.44614 1.17127 1.69231 1.01848 1.19031 0.92700 1.34028 0.90258 0.90494 1.24770 0.97730 1.01504 0.96078 1.69948 1.27164 1.50368 1.08871 0.86153 0.81588 0.79376 0.78949 1.21630 1.20732 1.21707 1.21966 0.90043 0.93414 0.94863 0.93031 0.91872 0.84942 0.77239 0.90446 0.89025 0.89267 0.79734 0.91836 0.91541 0.91302 0.95449 0.93709 0.95059 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.80 7.00 59.85 0.42 1.22 16 2 N -0.58 -10.58 2.91 -172.60 -0.50 -11.08 16 3 C 0.59 10.63 7.66 -12.52 -0.10 10.53 16 4 O -0.57 -11.42 16.30 5.27 0.09 -11.33 16 5 C -0.28 -4.37 5.94 -105.07 -0.62 -5.00 16 6 C 0.07 1.01 9.88 -16.98 -0.17 0.84 16 7 N -0.31 -4.41 12.50 30.86 0.39 -4.02 16 8 N -0.37 -4.34 3.98 -67.60 -0.27 -4.61 16 9 C 0.10 0.63 11.44 59.85 0.68 1.32 16 10 C 0.12 1.51 11.30 -16.56 -0.19 1.32 16 11 C 0.13 2.36 3.67 -65.66 -0.24 2.12 16 12 H 0.10 1.84 7.02 -51.93 -0.36 1.48 16 13 C -0.16 -2.92 6.48 -24.89 -0.16 -3.08 16 14 C 0.17 3.81 4.39 -3.06 -0.01 3.80 16 15 N -0.60 -14.37 1.86 -169.93 -0.32 -14.69 16 16 C -0.23 -6.09 9.79 -15.06 -0.15 -6.24 16 17 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 18 C 0.00 -0.11 5.45 -17.43 -0.09 -0.20 16 19 N -0.92 -25.23 10.47 55.49 0.58 -24.65 16 20 Si 0.91 21.29 29.56 -169.99 -5.02 16.27 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.12 2.55 6.47 -2.41 -0.02 2.53 16 25 H 0.05 0.87 7.38 -51.93 -0.38 0.49 16 26 H 0.06 1.01 5.24 -51.93 -0.27 0.73 16 27 H 0.13 2.87 4.38 -51.93 -0.23 2.64 16 28 H 0.21 2.91 4.47 -52.49 -0.23 2.68 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.19 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.71 5.92 -51.93 -0.31 1.40 16 36 H 0.03 0.70 7.99 -51.93 -0.41 0.28 16 37 H 0.25 6.83 8.31 -40.82 -0.34 6.50 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 311.96 15.07 4.70 4.70 Total: -1.00 -31.76 311.96 -6.14 -37.90 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.13 Total: 2.36 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -0.64 Total: 9.15 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.12 Total: -59.05 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.76 -6.14 -37.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032895086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.559 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds