Wall clock time and date at job start Wed Apr 15 2020 11:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39930 * 125.75327 * 2 1 4 4 C 1.30443 * 108.89688 * 179.97438 * 3 2 1 5 5 C 1.41286 * 108.02288 * 0.02562 * 4 3 2 6 6 C 1.47436 * 126.41554 * 179.73887 * 5 4 3 7 7 O 1.21604 * 119.99904 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99941 * 0.02562 * 6 5 4 9 9 C 1.46495 * 120.00041 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47053 * 179.97438 * 9 8 6 11 11 N 1.46503 * 109.47272 * 180.02562 * 10 9 8 12 12 C 1.36936 * 120.00413 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99718 * 0.02562 * 12 11 10 14 14 C 1.38808 * 120.00024 * 180.02562 * 12 11 10 15 15 N 1.31623 * 120.00010 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00337 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47106 * 89.99596 * 16 14 12 18 18 H 1.48493 * 109.47499 * 209.99839 * 16 14 12 19 19 H 1.48506 * 109.46933 * 330.00187 * 16 14 12 20 20 C 1.34260 * 125.75288 * 179.97438 * 2 1 3 21 21 C 1.50696 * 126.29148 * 0.02562 * 20 2 1 22 22 C 1.53006 * 117.49987 * 311.19614 * 21 20 2 23 23 C 1.53001 * 117.49693 * 242.53483 * 21 20 2 24 24 H 1.09000 * 109.47293 * 95.38559 * 1 2 3 25 25 H 1.08996 * 109.46904 * 215.38685 * 1 2 3 26 26 H 1.09004 * 109.46844 * 335.38455 * 1 2 3 27 27 H 1.07999 * 125.99151 * 179.97438 * 4 3 2 28 28 H 0.96998 * 119.99944 * 0.02562 * 8 6 5 29 29 H 1.09003 * 109.47214 * 300.00527 * 9 8 6 30 30 H 1.09002 * 109.47126 * 60.00464 * 9 8 6 31 31 H 1.08996 * 109.47352 * 299.99976 * 10 9 8 32 32 H 1.09001 * 109.47239 * 60.00499 * 10 9 8 33 33 H 0.97008 * 119.99851 * 0.02562 * 11 10 9 34 34 H 0.96998 * 120.00297 * 180.02562 * 15 14 12 35 35 H 1.09002 * 115.54886 * 96.86724 * 21 20 2 36 36 H 1.09001 * 117.49794 * 0.02562 * 22 21 20 37 37 H 1.08996 * 117.49424 * 145.02181 * 22 21 20 38 38 H 1.08997 * 117.49870 * 214.97502 * 23 21 20 39 39 H 1.08992 * 117.49946 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2826 1.1356 0.0000 4 6 3.5310 0.7573 0.0006 5 6 3.5598 -0.6552 0.0003 6 6 4.7638 -1.5061 -0.0046 7 8 4.6525 -2.7171 -0.0047 8 7 5.9878 -0.9418 -0.0090 9 6 7.1841 -1.7873 -0.0134 10 6 8.4331 -0.9036 -0.0185 11 7 9.6295 -1.7490 -0.0235 12 6 10.8731 -1.1757 -0.0292 13 1 10.9719 -0.1002 -0.0295 14 6 12.0067 -1.9768 -0.0344 15 7 13.2020 -1.4258 -0.0393 16 14 11.8359 -3.8370 -0.0345 17 1 11.7844 -4.3293 -1.4346 18 1 13.0009 -4.4412 0.6602 19 1 10.5861 -4.2193 0.6708 20 6 2.2495 -1.0896 0.0005 21 6 1.7849 -2.5231 0.0006 22 6 0.7164 -2.9195 1.0215 23 6 2.1622 -3.3879 1.2051 24 1 -0.3634 -0.0965 -1.0231 25 1 -0.3633 -0.8378 0.5951 26 1 -0.3633 0.9343 0.4281 27 1 4.3918 1.4096 0.0003 28 1 6.0765 0.0241 -0.0086 29 1 7.1875 -2.4167 0.8765 30 1 7.1811 -2.4165 -0.9035 31 1 8.4295 -0.2746 -0.9087 32 1 8.4364 -0.2740 0.8713 33 1 9.5408 -2.7150 -0.0235 34 1 13.9941 -1.9856 -0.0434 35 1 1.7522 -3.0068 -0.9757 36 1 0.3492 -2.1432 1.6928 37 1 -0.0189 -3.6641 0.7169 38 1 2.3772 -4.4405 1.0213 39 1 2.7460 -2.9198 1.9976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153539140.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:52:38 Heat of formation + Delta-G solvation = 84.818030 kcal Electronic energy + Delta-G solvation = -20901.632999 eV Core-core repulsion = 17654.559484 eV Total energy + Delta-G solvation = -3247.073516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.77374 -39.01003 -37.34901 -35.71868 -33.91168 -33.50756 -31.41006 -30.47548 -28.52836 -27.01822 -24.15045 -23.20373 -22.87740 -22.05908 -21.45219 -20.44777 -19.53007 -17.95542 -17.46181 -16.51779 -15.77225 -15.62140 -15.26408 -15.12737 -14.75986 -14.49770 -14.17768 -13.75187 -13.70589 -13.46471 -12.98582 -12.91684 -12.60301 -12.29786 -11.78325 -11.51657 -11.50738 -11.44424 -10.90071 -10.87269 -10.82005 -10.52870 -10.13831 -9.73979 -9.66845 -9.59354 -9.01574 -8.90687 -8.65512 -7.27492 -5.77847 -3.14935 1.29816 2.00553 2.01581 3.33564 3.40151 3.43181 3.44211 3.48509 3.51970 4.01958 4.17514 4.48170 4.59705 4.61710 4.71385 4.75076 4.87943 4.97893 5.04526 5.19481 5.25445 5.40418 5.48339 5.56130 5.61550 5.71547 5.72352 5.76420 5.88874 6.03305 6.17222 6.48543 6.52232 6.64682 6.72850 7.28627 7.72185 7.96283 8.40265 8.44499 9.18441 9.90725 10.09337 11.40109 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032269 B = 0.003215 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.488413 B = 8708.376453 C = 9476.207381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.360 5.360 3 N -0.298 5.298 4 C 0.082 3.918 5 C -0.285 4.285 6 C 0.591 3.409 7 O -0.542 6.542 8 N -0.721 5.721 9 C 0.112 3.888 10 C 0.148 3.852 11 N -0.753 5.753 12 C -0.247 4.247 13 H 0.091 0.909 14 C 0.006 3.994 15 N -0.933 5.933 16 Si 0.885 3.115 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.275 1.275 20 C 0.182 3.818 21 C -0.098 4.098 22 C -0.189 4.189 23 C -0.121 4.121 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.192 0.808 28 H 0.398 0.602 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.363 0.637 34 H 0.260 0.740 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.906 0.945 1.021 29.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.138 5.138 3 N -0.117 5.117 4 C -0.105 4.105 5 C -0.300 4.300 6 C 0.378 3.622 7 O -0.420 6.420 8 N -0.372 5.372 9 C -0.012 4.012 10 C 0.020 3.980 11 N -0.399 5.399 12 C -0.377 4.377 13 H 0.109 0.891 14 C -0.190 4.190 15 N -0.580 5.580 16 Si 0.715 3.285 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.201 1.201 20 C 0.050 3.950 21 C -0.118 4.118 22 C -0.226 4.226 23 C -0.159 4.159 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.209 0.791 28 H 0.232 0.768 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.196 0.804 34 H 0.070 0.930 35 H 0.147 0.853 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -30.744 1.284 1.018 30.787 hybrid contribution 0.687 -1.310 -0.103 1.483 sum -30.057 -0.026 0.915 30.071 Atomic orbital electron populations 1.22089 0.73840 1.05072 1.03915 1.48324 1.06977 1.03235 1.55312 1.77205 1.01977 1.07174 1.25350 1.24077 0.95406 0.93906 0.97115 1.20028 0.92914 0.93409 1.23627 1.17139 0.82008 0.87014 0.76069 1.90762 1.86694 1.13858 1.50678 1.45643 1.05398 1.10406 1.75762 1.21543 0.83487 0.93837 1.02341 1.20740 0.84848 0.93144 0.99272 1.42538 1.01900 1.04138 1.91334 1.19018 0.81375 0.93761 1.43528 0.89092 1.24673 0.95027 0.97555 1.01750 1.69702 0.96790 1.34287 1.57262 0.86538 0.77048 0.87019 0.77918 1.20940 1.21646 1.20124 1.20523 0.89817 0.89075 0.95589 1.20430 1.04919 0.88949 0.97508 1.23240 0.93462 1.03925 1.02011 1.22805 0.95207 1.00100 0.97768 0.90268 0.88903 0.88832 0.79108 0.76788 0.91423 0.91421 0.94893 0.94943 0.80397 0.92972 0.85300 0.88867 0.87807 0.87649 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 11.16 59.85 0.67 1.18 16 2 N -0.36 -3.58 3.98 -63.34 -0.25 -3.84 16 3 N -0.30 -3.44 12.50 30.86 0.39 -3.06 16 4 C 0.08 0.89 11.50 -16.98 -0.20 0.70 16 5 C -0.28 -3.55 6.13 -105.07 -0.64 -4.19 16 6 C 0.59 8.57 7.81 -12.51 -0.10 8.47 16 7 O -0.54 -9.24 14.51 5.27 0.08 -9.16 16 8 N -0.72 -9.76 5.55 -61.38 -0.34 -10.10 16 9 C 0.11 1.82 5.79 -4.05 -0.02 1.80 16 10 C 0.15 2.77 6.37 -4.04 -0.03 2.74 16 11 N -0.75 -18.01 5.41 -59.91 -0.32 -18.33 16 12 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 13 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 14 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 15 N -0.93 -29.39 13.97 55.49 0.78 -28.61 16 16 Si 0.88 22.29 27.74 -169.99 -4.71 17.57 16 17 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 19 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 20 C 0.18 2.03 6.44 -81.60 -0.53 1.50 16 21 C -0.10 -0.92 5.06 -91.77 -0.46 -1.39 16 22 C -0.19 -1.25 8.92 -26.69 -0.24 -1.49 16 23 C -0.12 -1.15 8.76 -26.69 -0.23 -1.39 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.09 0.36 5.24 -51.93 -0.27 0.08 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.19 1.46 7.50 -52.49 -0.39 1.07 16 28 H 0.40 4.31 7.43 -40.82 -0.30 4.00 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.36 8.54 5.53 -40.82 -0.23 8.31 16 34 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 35 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 0.56 6.81 -51.93 -0.35 0.21 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -35.49 328.60 -6.84 -42.34 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.37 Total: 7.40 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -2.03 Total: 0.83 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: 0.24 Total: -63.94 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.49 -6.84 -42.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153539140.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.155 kcal (2) G-P(sol) polarization free energy of solvation -35.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds