Wall clock time and date at job start Wed Apr 15 2020 11:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39930 * 125.75327 * 2 1 4 4 C 1.30443 * 108.89688 * 179.97438 * 3 2 1 5 5 C 1.41286 * 108.02288 * 0.02562 * 4 3 2 6 6 C 1.47436 * 126.41554 * 179.73887 * 5 4 3 7 7 O 1.21604 * 119.99904 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99941 * 0.02562 * 6 5 4 9 9 C 1.46495 * 120.00041 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47053 * 179.97438 * 9 8 6 11 11 N 1.46503 * 109.47272 * 180.02562 * 10 9 8 12 12 C 1.36936 * 120.00413 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99718 * 0.02562 * 12 11 10 14 14 C 1.38808 * 120.00024 * 180.02562 * 12 11 10 15 15 N 1.31623 * 120.00010 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00337 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47106 * 89.99596 * 16 14 12 18 18 H 1.48493 * 109.47499 * 209.99839 * 16 14 12 19 19 H 1.48506 * 109.46933 * 330.00187 * 16 14 12 20 20 C 1.34260 * 125.75288 * 179.97438 * 2 1 3 21 21 C 1.50696 * 126.29148 * 0.02562 * 20 2 1 22 22 C 1.53006 * 117.49987 * 311.19614 * 21 20 2 23 23 C 1.53001 * 117.49693 * 242.53483 * 21 20 2 24 24 H 1.09000 * 109.47293 * 95.38559 * 1 2 3 25 25 H 1.08996 * 109.46904 * 215.38685 * 1 2 3 26 26 H 1.09004 * 109.46844 * 335.38455 * 1 2 3 27 27 H 1.07999 * 125.99151 * 179.97438 * 4 3 2 28 28 H 0.96998 * 119.99944 * 0.02562 * 8 6 5 29 29 H 1.09003 * 109.47214 * 300.00527 * 9 8 6 30 30 H 1.09002 * 109.47126 * 60.00464 * 9 8 6 31 31 H 1.08996 * 109.47352 * 299.99976 * 10 9 8 32 32 H 1.09001 * 109.47239 * 60.00499 * 10 9 8 33 33 H 0.97008 * 119.99851 * 0.02562 * 11 10 9 34 34 H 0.96998 * 120.00297 * 180.02562 * 15 14 12 35 35 H 1.09002 * 115.54886 * 96.86724 * 21 20 2 36 36 H 1.09001 * 117.49794 * 0.02562 * 22 21 20 37 37 H 1.08996 * 117.49424 * 145.02181 * 22 21 20 38 38 H 1.08997 * 117.49870 * 214.97502 * 23 21 20 39 39 H 1.08992 * 117.49946 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2826 1.1356 0.0000 4 6 3.5310 0.7573 0.0006 5 6 3.5598 -0.6552 0.0003 6 6 4.7638 -1.5061 -0.0046 7 8 4.6525 -2.7171 -0.0047 8 7 5.9878 -0.9418 -0.0090 9 6 7.1841 -1.7873 -0.0134 10 6 8.4331 -0.9036 -0.0185 11 7 9.6295 -1.7490 -0.0235 12 6 10.8731 -1.1757 -0.0292 13 1 10.9719 -0.1002 -0.0295 14 6 12.0067 -1.9768 -0.0344 15 7 13.2020 -1.4258 -0.0393 16 14 11.8359 -3.8370 -0.0345 17 1 11.7844 -4.3293 -1.4346 18 1 13.0009 -4.4412 0.6602 19 1 10.5861 -4.2193 0.6708 20 6 2.2495 -1.0896 0.0005 21 6 1.7849 -2.5231 0.0006 22 6 0.7164 -2.9195 1.0215 23 6 2.1622 -3.3879 1.2051 24 1 -0.3634 -0.0965 -1.0231 25 1 -0.3633 -0.8378 0.5951 26 1 -0.3633 0.9343 0.4281 27 1 4.3918 1.4096 0.0003 28 1 6.0765 0.0241 -0.0086 29 1 7.1875 -2.4167 0.8765 30 1 7.1811 -2.4165 -0.9035 31 1 8.4295 -0.2746 -0.9087 32 1 8.4364 -0.2740 0.8713 33 1 9.5408 -2.7150 -0.0235 34 1 13.9941 -1.9856 -0.0434 35 1 1.7522 -3.0068 -0.9757 36 1 0.3492 -2.1432 1.6928 37 1 -0.0189 -3.6641 0.7169 38 1 2.3772 -4.4405 1.0213 39 1 2.7460 -2.9198 1.9976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153539140.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:52:37 Heat of formation + Delta-G solvation = 58.638666 kcal Electronic energy + Delta-G solvation = -20902.768222 eV Core-core repulsion = 17654.559484 eV Total energy + Delta-G solvation = -3248.208738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.58014 -40.15690 -38.03479 -37.33752 -35.41681 -34.31547 -33.38028 -31.39305 -29.91826 -27.90785 -25.49159 -24.41541 -23.56621 -23.14841 -22.92321 -21.33589 -20.48048 -19.76411 -18.62235 -17.31119 -16.97883 -16.64637 -16.38074 -16.30062 -15.93606 -15.56418 -15.45896 -15.02751 -15.00270 -14.75915 -14.42061 -13.59199 -13.51614 -13.41229 -13.13887 -13.04158 -12.67314 -12.54686 -12.38508 -12.26870 -12.05965 -11.81034 -11.53500 -11.22243 -11.01519 -10.84759 -10.41962 -10.11963 -9.60229 -9.34265 -8.03645 -5.38833 0.44974 1.12930 1.34284 1.40748 1.42728 1.50062 2.24370 2.47076 2.48615 2.75000 3.28177 3.34675 3.47562 3.79934 3.87189 3.91406 3.97575 4.07439 4.23963 4.26060 4.26224 4.38678 4.48506 4.59524 4.62423 4.75339 4.79824 4.98451 5.07768 5.08703 5.14276 5.20541 5.36063 5.47961 5.74399 5.82496 6.19488 6.46783 6.67734 7.05160 7.34619 7.79769 7.97838 9.17283 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032269 B = 0.003215 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.488413 B = 8708.376453 C = 9476.207381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.355 5.355 3 N -0.319 5.319 4 C 0.084 3.916 5 C -0.312 4.312 6 C 0.590 3.410 7 O -0.572 6.572 8 N -0.713 5.713 9 C 0.129 3.871 10 C 0.149 3.851 11 N -0.758 5.758 12 C -0.237 4.237 13 H 0.063 0.937 14 C -0.061 4.061 15 N -0.981 5.981 16 Si 0.953 3.047 17 H -0.277 1.277 18 H -0.294 1.294 19 H -0.253 1.253 20 C 0.183 3.817 21 C -0.112 4.112 22 C -0.152 4.152 23 C -0.141 4.141 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.216 0.784 28 H 0.412 0.588 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.367 0.633 34 H 0.259 0.741 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.831 0.321 1.069 32.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.133 5.133 3 N -0.138 5.138 4 C -0.103 4.103 5 C -0.327 4.327 6 C 0.379 3.621 7 O -0.452 6.452 8 N -0.365 5.365 9 C 0.004 3.996 10 C 0.023 3.977 11 N -0.405 5.405 12 C -0.368 4.368 13 H 0.081 0.919 14 C -0.253 4.253 15 N -0.632 5.632 16 Si 0.780 3.220 17 H -0.203 1.203 18 H -0.221 1.221 19 H -0.177 1.177 20 C 0.049 3.951 21 C -0.131 4.131 22 C -0.189 4.189 23 C -0.179 4.179 24 H 0.113 0.887 25 H 0.131 0.869 26 H 0.122 0.878 27 H 0.232 0.768 28 H 0.249 0.751 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.200 0.800 34 H 0.068 0.932 35 H 0.148 0.852 36 H 0.122 0.878 37 H 0.148 0.852 38 H 0.121 0.879 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -33.749 0.707 1.068 33.773 hybrid contribution 1.490 -1.003 -0.119 1.800 sum -32.259 -0.296 0.949 32.274 Atomic orbital electron populations 1.22486 0.71394 1.06536 1.05475 1.48663 1.08310 1.02421 1.53952 1.77164 1.02383 1.08201 1.26093 1.24456 0.96080 0.93549 0.96166 1.19976 0.92694 0.93985 1.26082 1.17432 0.82544 0.86879 0.75244 1.90740 1.87121 1.15212 1.52166 1.45466 1.04450 1.10930 1.75646 1.21167 0.83370 0.93371 1.01693 1.20836 0.84059 0.93049 0.99755 1.42552 1.01879 1.04830 1.91234 1.19017 0.83315 0.92710 1.41727 0.91912 1.25497 0.94642 1.02769 1.02391 1.69873 0.97715 1.36173 1.59395 0.85434 0.77654 0.80671 0.78216 1.20342 1.22058 1.17720 1.20794 0.89771 0.90099 0.94484 1.20490 1.06899 0.87943 0.97809 1.23344 0.92149 1.03712 0.99704 1.22735 0.97776 0.99839 0.97562 0.88732 0.86941 0.87825 0.76779 0.75144 0.92158 0.92085 0.94112 0.94182 0.80000 0.93202 0.85199 0.87797 0.85209 0.87920 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 11.16 127.77 1.43 2.09 16 2 N -0.36 -6.38 3.98 -354.31 -1.41 -7.79 16 3 N -0.32 -6.86 12.50 -56.28 -0.70 -7.57 16 4 C 0.08 1.72 11.50 85.65 0.99 2.70 16 5 C -0.31 -7.50 6.13 -20.15 -0.12 -7.62 16 6 C 0.59 16.79 7.81 86.67 0.68 17.47 16 7 O -0.57 -19.45 14.51 -4.04 -0.06 -19.51 16 8 N -0.71 -18.52 5.55 -466.37 -2.59 -21.11 16 9 C 0.13 4.05 5.79 86.38 0.50 4.55 16 10 C 0.15 5.43 6.37 86.38 0.55 5.98 16 11 N -0.76 -35.54 5.41 -343.45 -1.86 -37.40 16 12 C -0.24 -13.53 10.47 84.03 0.88 -12.65 16 13 H 0.06 3.87 8.06 -2.91 -0.02 3.84 16 14 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 15 N -0.98 -63.01 13.97 21.65 0.30 -62.71 16 16 Si 0.95 45.88 27.74 68.60 1.90 47.78 16 17 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 18 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 19 H -0.25 -11.08 6.52 99.48 0.65 -10.43 16 20 C 0.18 3.82 6.44 42.14 0.27 4.09 16 21 C -0.11 -1.93 5.06 -11.54 -0.06 -1.98 16 22 C -0.15 -1.59 8.92 30.62 0.27 -1.31 16 23 C -0.14 -2.58 8.76 30.62 0.27 -2.32 16 24 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.11 0.46 5.24 -2.39 -0.01 0.45 16 26 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.22 2.91 7.50 -2.91 -0.02 2.89 16 28 H 0.41 8.29 7.43 -92.71 -0.69 7.60 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.37 16.60 5.53 -92.70 -0.51 16.09 16 34 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 35 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.10 0.89 6.81 -2.39 -0.02 0.87 16 37 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -77.12 328.60 1.53 -75.59 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -0.18 Total: 24.88 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 6.12 Total: 7.84 kcal Atomic # 7 Polarization: -130.32 SS G_CDS: -6.26 Total: -136.58 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.06 Total: -19.51 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.90 Total: 47.78 kcal Total: -77.12 1.53 -75.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153539140.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.231 kcal (2) G-P(sol) polarization free energy of solvation -77.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds