Wall clock time and date at job start Wed Apr 15 2020 11:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 119.99987 * 2 1 4 4 H 1.08006 * 120.00111 * 201.72330 * 3 2 1 5 5 C 1.38809 * 120.00159 * 21.72728 * 3 2 1 6 6 N 1.31617 * 119.99884 * 13.65010 * 5 3 2 7 7 Si 1.86804 * 120.00247 * 193.64866 * 5 3 2 8 8 H 1.48505 * 109.46808 * 60.00309 * 7 5 3 9 9 H 1.48499 * 109.46896 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.46882 * 300.00103 * 7 5 3 11 11 C 1.46501 * 120.00104 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.64310 * 176.85683 * 11 2 1 13 13 C 1.55156 * 110.87168 * 53.60511 * 11 2 1 14 14 C 1.55127 * 101.48606 * 205.89722 * 13 11 2 15 15 N 1.47424 * 104.72052 * 37.30147 * 14 13 11 16 16 C 1.34783 * 125.65240 * 155.81814 * 15 14 13 17 17 O 1.21279 * 119.99943 * 179.68692 * 16 15 14 18 18 C 1.50697 * 119.99658 * 359.68640 * 16 15 14 19 19 C 1.50696 * 109.47020 * 180.02562 * 18 16 15 20 20 N 1.30501 * 125.65160 * 305.02253 * 19 18 16 21 21 C 1.34131 * 109.25699 * 179.97438 * 20 19 18 22 22 C 1.34668 * 108.01901 * 0.02562 * 21 20 19 23 23 N 1.35048 * 125.64777 * 124.72079 * 19 18 16 24 24 H 0.96999 * 126.39809 * 359.97438 * 23 19 18 25 25 C 1.47022 * 108.70275 * 335.54809 * 15 14 13 26 26 H 1.09002 * 109.46831 * 274.45526 * 1 2 3 27 27 H 1.08997 * 109.46878 * 34.45362 * 1 2 3 28 28 H 1.08997 * 109.47056 * 154.45749 * 1 2 3 29 29 H 0.97004 * 120.00574 * 179.97438 * 6 5 3 30 30 H 1.08996 * 111.00808 * 324.13934 * 13 11 2 31 31 H 1.09000 * 111.00641 * 87.95208 * 13 11 2 32 32 H 1.08995 * 110.50364 * 278.45402 * 14 13 11 33 33 H 1.09003 * 110.34419 * 156.05633 * 14 13 11 34 34 H 1.09007 * 109.47089 * 300.00226 * 18 16 15 35 35 H 1.09001 * 109.47281 * 59.99685 * 18 16 15 36 36 H 1.07995 * 125.98753 * 180.02562 * 21 20 19 37 37 H 1.08004 * 126.58707 * 180.02562 * 22 21 20 38 38 H 1.08996 * 109.88445 * 120.70656 * 25 15 14 39 39 H 1.09000 * 109.88273 * 241.87464 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1722 1.2191 -0.3462 5 6 1.5297 2.3453 0.4450 6 7 0.3968 2.2717 1.1109 7 14 2.3031 4.0101 0.0989 8 1 2.4197 4.2062 -1.3686 9 1 1.4508 5.0812 0.6747 10 1 3.6532 4.0663 0.7146 11 6 2.1976 -1.2687 -0.0006 12 1 3.2717 -1.0922 -0.0564 13 6 1.7290 -2.1770 -1.1679 14 6 2.0622 -3.5875 -0.6148 15 7 1.7544 -3.5076 0.8248 16 6 1.4462 -4.5504 1.6213 17 8 1.2155 -4.3673 2.7978 18 6 1.3883 -5.9436 1.0499 19 6 1.0248 -6.9188 2.1398 20 7 1.6561 -7.0633 3.2727 21 6 1.0545 -8.0197 3.9955 22 6 0.0111 -8.4860 3.2831 23 7 -0.0116 -7.7840 2.1082 24 1 -0.6516 -7.8895 1.3869 25 6 1.8456 -2.1029 1.2491 26 1 -0.3633 0.0798 1.0246 27 1 -0.3633 0.8474 -0.5814 28 1 -0.3633 -0.9272 -0.4431 29 1 -0.0365 3.0819 1.4222 30 1 0.6592 -2.0656 -1.3446 31 1 2.2963 -1.9706 -2.0755 32 1 3.1170 -3.8172 -0.7650 33 1 1.4370 -4.3403 -1.0950 34 1 0.6357 -5.9823 0.2623 35 1 2.3615 -6.2072 0.6357 36 1 1.3544 -8.3568 4.9767 37 1 -0.6783 -9.2612 3.5834 38 1 0.8887 -1.7757 1.6558 39 1 2.6273 -1.9927 2.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972615486.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:54:06 Heat of formation + Delta-G solvation = 61.162009 kcal Electronic energy + Delta-G solvation = -21504.819458 eV Core-core repulsion = 18256.720140 eV Total energy + Delta-G solvation = -3248.099318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.10302 -39.60412 -37.35323 -34.76520 -32.58361 -32.26700 -31.41274 -29.69529 -28.31951 -26.97957 -26.03161 -23.51845 -22.37162 -21.65642 -20.92605 -19.33301 -19.02896 -17.88414 -17.03488 -16.87394 -15.95184 -15.13329 -15.11131 -14.79681 -14.14351 -13.94251 -13.85052 -13.40671 -13.35080 -12.99170 -12.78571 -12.42551 -12.17897 -12.08403 -11.78045 -11.50342 -10.90857 -10.79325 -10.56789 -10.44345 -10.29371 -10.07005 -9.96467 -9.88685 -9.82482 -9.56206 -8.57148 -8.48932 -8.23945 -6.82957 -5.75988 -3.22558 1.91561 2.83556 2.91234 3.11762 3.38027 3.42500 3.44160 3.47278 4.23166 4.46446 4.71586 4.76653 4.98363 5.03438 5.17626 5.26656 5.32438 5.36325 5.51387 5.57655 5.63332 5.80203 5.90144 5.98413 6.00784 6.34566 6.37785 6.56774 6.67545 6.69905 6.83436 6.88348 7.21811 7.33606 7.70508 7.77924 7.85738 8.08850 8.34289 8.48380 9.18573 9.81290 10.29642 11.28694 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.039687 B = 0.003419 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.360064 B = 8187.459565 C = 8433.893353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.263 4.263 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.904 5.904 7 Si 0.908 3.092 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.172 3.828 12 H 0.078 0.922 13 C -0.153 4.153 14 C 0.100 3.900 15 N -0.616 5.616 16 C 0.526 3.474 17 O -0.519 6.519 18 C -0.051 4.051 19 C 0.221 3.779 20 N -0.460 5.460 21 C -0.027 4.027 22 C -0.060 4.060 23 N -0.568 5.568 24 H 0.417 0.583 25 C 0.089 3.911 26 H 0.030 0.970 27 H 0.045 0.955 28 H 0.001 0.999 29 H 0.254 0.746 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.169 0.831 37 H 0.176 0.824 38 H 0.071 0.929 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.800 -20.286 -4.594 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.392 4.392 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.193 4.193 14 C -0.023 4.023 15 N -0.351 5.351 16 C 0.312 3.688 17 O -0.394 6.394 18 C -0.092 4.092 19 C -0.043 4.043 20 N -0.179 5.179 21 C -0.175 4.175 22 C -0.194 4.194 23 N -0.171 5.171 24 H 0.254 0.746 25 C -0.036 4.036 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.020 0.980 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.135 0.865 36 H 0.186 0.814 37 H 0.193 0.807 38 H 0.090 0.910 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.358 -19.609 -3.521 19.926 hybrid contribution -0.802 0.329 -0.592 1.049 sum -1.160 -19.280 -4.112 19.748 Atomic orbital electron populations 1.20801 0.82447 0.95656 0.99483 1.43922 1.01897 0.99921 1.84848 1.19194 0.97880 0.84991 1.37134 0.91136 1.25036 0.97804 0.98611 0.97997 1.70073 1.18818 1.27312 1.38648 0.86295 0.78467 0.83566 0.77947 1.21036 1.21639 1.20844 1.21358 0.96410 0.85935 0.90123 0.90343 1.23371 1.02742 0.93286 0.99932 1.22382 1.00075 0.99057 0.80832 1.48532 1.68782 1.07863 1.09934 1.19678 0.77990 0.84944 0.86181 1.90774 1.48283 1.84728 1.15599 1.19923 1.04762 0.90250 0.94301 1.22407 0.89147 0.95897 0.96848 1.70271 1.29020 1.16367 1.02231 1.22395 0.96214 0.97750 1.01171 1.22705 1.04675 1.03551 0.88439 1.43231 1.25571 1.30815 1.17502 0.74597 1.22917 1.02296 0.78410 0.99940 0.95193 0.93636 0.98013 0.93559 0.90409 0.90413 0.91456 0.91510 0.87827 0.86509 0.81410 0.80682 0.91043 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.87 7.82 59.85 0.47 4.33 16 2 N -0.59 -14.17 2.93 -171.39 -0.50 -14.67 16 3 C -0.26 -7.03 9.63 -15.06 -0.14 -7.17 16 4 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 5 C 0.00 0.12 5.08 -17.43 -0.09 0.03 16 6 N -0.90 -26.23 10.67 55.49 0.59 -25.63 16 7 Si 0.91 21.58 29.58 -169.99 -5.03 16.55 16 8 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 C 0.17 3.34 3.43 -66.10 -0.23 3.12 16 12 H 0.08 1.50 7.92 -51.93 -0.41 1.09 16 13 C -0.15 -2.28 6.61 -24.47 -0.16 -2.45 16 14 C 0.10 1.20 6.70 -2.41 -0.02 1.19 16 15 N -0.62 -9.85 3.32 -170.39 -0.57 -10.42 16 16 C 0.53 8.70 7.84 -10.98 -0.09 8.61 16 17 O -0.52 -11.20 15.88 5.56 0.09 -11.11 16 18 C -0.05 -0.57 5.33 -29.04 -0.15 -0.72 16 19 C 0.22 2.92 6.96 -155.41 -1.08 1.84 16 20 N -0.46 -7.40 10.58 -10.82 -0.11 -7.52 16 21 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 22 C -0.06 -0.58 12.04 -16.56 -0.20 -0.78 16 23 N -0.57 -5.47 6.15 -10.23 -0.06 -5.54 16 24 H 0.42 2.43 8.96 -40.82 -0.37 2.06 16 25 C 0.09 1.75 6.51 -3.06 -0.02 1.73 16 26 H 0.03 0.80 7.33 -51.93 -0.38 0.42 16 27 H 0.04 1.18 7.23 -51.93 -0.38 0.80 16 28 H 0.00 0.03 6.04 -51.93 -0.31 -0.28 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.08 1.24 6.07 -51.93 -0.32 0.92 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.60 7.48 -51.93 -0.39 0.21 16 34 H 0.10 0.78 7.85 -51.93 -0.41 0.37 16 35 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.18 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.07 1.63 7.11 -51.93 -0.37 1.26 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -35.95 321.06 -8.09 -44.04 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.41 Total: 0.28 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: -1.92 Total: 9.18 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -0.65 Total: -63.78 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.95 -8.09 -44.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972615486.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.199 kcal (2) G-P(sol) polarization free energy of solvation -35.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds