Wall clock time and date at job start Wed Apr 15 2020 11:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38218 * 119.99060 * 2 1 4 4 C 1.38433 * 119.97695 * 180.27710 * 3 2 1 5 5 F 1.35095 * 120.02746 * 179.76381 * 4 3 2 6 6 C 1.38481 * 119.94732 * 359.73762 * 4 3 2 7 7 C 1.38182 * 119.97316 * 0.02562 * 6 4 3 8 8 C 1.38223 * 119.98461 * 179.76095 * 2 1 3 9 9 C 1.50698 * 119.97713 * 0.02562 * 8 2 1 10 10 N 1.46901 * 109.47178 * 287.37558 * 9 8 2 11 11 C 1.46904 * 110.99816 * 164.36627 * 10 9 8 12 12 C 1.53246 * 109.33650 * 187.25036 * 11 10 9 13 13 N 1.47078 * 108.52193 * 306.17362 * 12 11 10 14 14 C 1.36942 * 120.87896 * 231.18862 * 13 12 11 15 15 H 1.08005 * 119.99746 * 28.96153 * 14 13 12 16 16 C 1.38808 * 120.00106 * 208.68144 * 14 13 12 17 17 N 1.31625 * 119.99592 * 11.85953 * 16 14 13 18 18 Si 1.86795 * 120.00036 * 191.85831 * 16 14 13 19 19 H 1.48490 * 109.47428 * 60.00466 * 18 16 14 20 20 H 1.48507 * 109.46932 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47282 * 299.99799 * 18 16 14 22 22 C 1.47073 * 118.24092 * 51.45331 * 13 12 11 23 23 C 1.46901 * 110.99688 * 288.66273 * 10 9 8 24 24 H 1.09004 * 109.47283 * 265.97974 * 1 2 3 25 25 H 1.09001 * 109.46623 * 25.97664 * 1 2 3 26 26 H 1.08995 * 109.46912 * 145.97682 * 1 2 3 27 27 H 1.08002 * 120.01288 * 0.03609 * 3 2 1 28 28 H 1.08006 * 120.01475 * 180.02562 * 6 4 3 29 29 H 1.08005 * 119.98233 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47697 * 167.36982 * 9 8 2 31 31 H 1.09010 * 109.47159 * 47.37008 * 9 8 2 32 32 H 1.08994 * 109.49150 * 67.29287 * 11 10 9 33 33 H 1.08999 * 109.51499 * 307.22270 * 11 10 9 34 34 H 1.08994 * 109.62862 * 186.46085 * 12 11 10 35 35 H 1.09002 * 109.78852 * 65.97523 * 12 11 10 36 36 H 0.97002 * 119.99711 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.63240 * 68.25542 * 22 13 12 38 38 H 1.09000 * 109.62901 * 188.83607 * 22 13 12 39 39 H 1.09000 * 109.49737 * 292.70857 * 23 10 9 40 40 H 1.09007 * 109.49048 * 52.76253 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5823 1.1968 -0.0058 5 9 4.2585 2.3663 -0.0106 6 6 4.2733 -0.0033 -0.0061 7 6 3.5805 -1.1988 -0.0011 8 6 2.1978 -1.1972 0.0050 9 6 1.4435 -2.5018 0.0099 10 7 0.8398 -2.7134 1.3323 11 6 -0.1912 -3.7586 1.2791 12 6 -0.9185 -3.8228 2.6264 13 7 0.0829 -3.9906 3.6905 14 6 -0.0428 -4.9850 4.6235 15 1 -0.5504 -5.9036 4.3686 16 6 0.4871 -4.8146 5.8951 17 7 0.8999 -3.6262 6.2822 18 14 0.6143 -6.2718 7.0569 19 1 1.4743 -7.3175 6.4471 20 1 1.2096 -5.8288 8.3433 21 1 -0.7405 -6.8273 7.3044 22 6 1.2198 -3.0584 3.7293 23 6 1.8661 -3.0279 2.3352 24 1 -0.3634 -0.0721 1.0252 25 1 -0.3632 0.9239 -0.4501 26 1 -0.3633 -0.8517 -0.5750 27 1 1.6580 2.1325 0.0006 28 1 5.3533 -0.0048 -0.0102 29 1 4.1193 -2.1349 -0.0010 30 1 2.1297 -3.3192 -0.2113 31 1 0.6593 -2.4709 -0.7467 32 1 0.2768 -4.7209 1.0722 33 1 -0.9064 -3.5248 0.4904 34 1 -1.6044 -4.6700 2.6322 35 1 -1.4752 -2.9000 2.7897 36 1 1.2699 -3.5071 7.1709 37 1 0.8672 -2.0617 3.9947 38 1 1.9483 -3.3998 4.4647 39 1 2.3054 -4.0005 2.1135 40 1 2.6433 -2.2639 2.3121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:54:07 Heat of formation + Delta-G solvation = 6.820099 kcal Electronic energy + Delta-G solvation = -21881.724373 eV Core-core repulsion = 18611.348651 eV Total energy + Delta-G solvation = -3270.375721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.85692 -39.62799 -37.69348 -34.52075 -32.72000 -31.85347 -30.40771 -29.85472 -27.48165 -26.59078 -24.53266 -22.55781 -22.49813 -22.18034 -20.59340 -19.06945 -17.17597 -16.82900 -16.42486 -15.62863 -15.60108 -15.18677 -14.50799 -14.42708 -14.04033 -13.57327 -13.44965 -13.39535 -13.27632 -13.06485 -12.90488 -12.74986 -12.05188 -11.73882 -11.58935 -11.42471 -11.18745 -10.98015 -10.90827 -10.75022 -10.45952 -10.28416 -10.02508 -9.76225 -9.62257 -8.85873 -8.50714 -8.42655 -7.81618 -6.61920 -5.76142 -3.21534 1.18806 1.27828 3.38335 3.43897 3.44614 3.56831 4.27855 4.46072 4.51878 4.73518 4.82266 4.96518 5.19020 5.24562 5.41985 5.45901 5.56824 5.59627 5.66075 5.81888 5.87027 5.94127 5.96932 6.06193 6.14358 6.15095 6.25928 6.32462 6.35024 6.36266 6.55952 6.66744 6.73259 6.94004 6.95934 7.28600 7.59884 7.68909 7.73590 7.83424 8.46936 9.23507 9.85665 10.44759 11.31966 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.004317 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.932751 B = 6484.294533 C = 6981.502340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.028 4.028 3 C -0.160 4.160 4 C 0.094 3.906 5 F -0.145 7.145 6 C -0.163 4.163 7 C -0.082 4.082 8 C -0.081 4.081 9 C 0.091 3.909 10 N -0.524 5.524 11 C 0.045 3.955 12 C 0.149 3.851 13 N -0.596 5.596 14 C -0.252 4.252 15 H 0.064 0.936 16 C 0.002 3.998 17 N -0.906 5.906 18 Si 0.905 3.095 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.180 3.820 23 C 0.036 3.964 24 H 0.087 0.913 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.027 0.973 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.025 0.975 36 H 0.254 0.746 37 H 0.025 0.975 38 H 0.090 0.910 39 H 0.023 0.977 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 6.369 -14.874 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.029 4.029 3 C -0.178 4.178 4 C 0.075 3.925 5 F -0.124 7.124 6 C -0.182 4.182 7 C -0.101 4.101 8 C -0.082 4.082 9 C -0.037 4.037 10 N -0.249 5.249 11 C -0.085 4.085 12 C 0.023 3.977 13 N -0.319 5.319 14 C -0.382 4.382 15 H 0.082 0.918 16 C -0.196 4.196 17 N -0.551 5.551 18 Si 0.734 3.266 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.054 3.946 23 C -0.094 4.094 24 H 0.105 0.895 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.108 0.892 39 H 0.042 0.958 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.640 6.865 -14.539 16.294 hybrid contribution 0.792 -1.184 0.461 1.498 sum 3.432 5.681 -14.078 15.564 Atomic orbital electron populations 1.20776 0.90126 1.01734 1.03807 1.19584 0.96698 0.91189 0.95427 1.20989 0.92116 0.99275 1.05454 1.17665 0.90184 0.81124 1.03546 1.91470 1.80389 1.46463 1.94085 1.21019 1.00530 0.91274 1.05354 1.20918 0.93588 0.97459 0.98114 1.19761 0.93103 0.95086 1.00225 1.21025 0.97110 0.92558 0.93020 1.61983 1.13880 1.45003 1.04043 1.22638 0.94007 0.91971 0.99854 1.20966 0.91327 0.98513 0.86936 1.44104 1.22065 1.35195 1.30531 1.19153 1.34824 0.93816 0.90400 0.91826 1.25095 1.01712 0.96244 0.96538 1.69969 1.45832 1.20340 1.18933 0.86340 0.77925 0.82076 0.80214 1.21101 1.21587 1.20898 1.20971 0.90277 0.92832 0.90542 1.23008 0.93398 0.97521 0.95426 0.89492 0.92436 0.91179 0.85059 0.85144 0.85385 0.94543 0.90282 0.95474 0.92074 0.92737 0.95720 0.93542 0.95685 0.89163 0.95829 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.32 36.01 0.34 -0.91 16 2 C -0.03 -0.37 5.88 -104.63 -0.62 -0.98 16 3 C -0.16 -2.02 9.66 -39.52 -0.38 -2.40 16 4 C 0.09 1.24 7.30 -39.42 -0.29 0.95 16 5 F -0.15 -1.95 17.27 2.25 0.04 -1.91 16 6 C -0.16 -2.00 10.03 -39.51 -0.40 -2.40 16 7 C -0.08 -1.03 9.14 -39.59 -0.36 -1.39 16 8 C -0.08 -1.08 4.59 -104.62 -0.48 -1.56 16 9 C 0.09 1.23 4.41 -4.98 -0.02 1.21 16 10 N -0.52 -8.84 4.33 -235.45 -1.02 -9.86 16 11 C 0.04 0.76 5.61 -3.69 -0.02 0.74 16 12 C 0.15 3.11 6.69 -3.60 -0.02 3.08 16 13 N -0.60 -15.00 3.03 -171.73 -0.52 -15.52 16 14 C -0.25 -6.93 9.64 -15.06 -0.15 -7.07 16 15 H 0.06 1.71 7.86 -52.48 -0.41 1.29 16 16 C 0.00 0.07 5.05 -17.43 -0.09 -0.02 16 17 N -0.91 -26.37 10.97 55.49 0.61 -25.76 16 18 Si 0.90 21.69 29.57 -169.99 -5.03 16.66 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.18 4.36 5.41 -3.37 -0.02 4.34 16 23 C 0.04 0.69 5.48 -3.46 -0.02 0.67 16 24 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 26 H 0.07 0.77 6.46 -51.93 -0.34 0.43 16 27 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 29 H 0.13 1.41 7.98 -52.48 -0.42 0.99 16 30 H 0.04 0.49 7.85 -51.93 -0.41 0.08 16 31 H 0.08 0.95 6.54 -51.92 -0.34 0.61 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.87 7.93 -51.93 -0.41 0.46 16 34 H 0.05 1.09 7.95 -51.93 -0.41 0.68 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 2.44 6.08 -51.93 -0.32 2.12 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 1.11 6.87 -51.93 -0.36 0.75 16 LS Contribution 323.41 15.07 4.87 4.87 Total: -1.00 -29.49 323.41 -9.49 -38.99 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.92 Total: -1.73 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -2.52 Total: -5.75 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.93 Total: -51.14 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.49 -9.49 -38.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.807 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds