Wall clock time and date at job start Wed Apr 15 2020 11:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38218 * 119.99060 * 2 1 4 4 C 1.38433 * 119.97695 * 180.27710 * 3 2 1 5 5 F 1.35095 * 120.02746 * 179.76381 * 4 3 2 6 6 C 1.38481 * 119.94732 * 359.73762 * 4 3 2 7 7 C 1.38182 * 119.97316 * 0.02562 * 6 4 3 8 8 C 1.38223 * 119.98461 * 179.76095 * 2 1 3 9 9 C 1.50698 * 119.97713 * 0.02562 * 8 2 1 10 10 N 1.46901 * 109.47178 * 287.37558 * 9 8 2 11 11 C 1.46904 * 110.99816 * 164.36627 * 10 9 8 12 12 C 1.53246 * 109.33650 * 187.25036 * 11 10 9 13 13 N 1.47078 * 108.52193 * 306.17362 * 12 11 10 14 14 C 1.36942 * 120.87896 * 231.18862 * 13 12 11 15 15 H 1.08005 * 119.99746 * 28.96153 * 14 13 12 16 16 C 1.38808 * 120.00106 * 208.68144 * 14 13 12 17 17 N 1.31625 * 119.99592 * 11.85953 * 16 14 13 18 18 Si 1.86795 * 120.00036 * 191.85831 * 16 14 13 19 19 H 1.48490 * 109.47428 * 60.00466 * 18 16 14 20 20 H 1.48507 * 109.46932 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47282 * 299.99799 * 18 16 14 22 22 C 1.47073 * 118.24092 * 51.45331 * 13 12 11 23 23 C 1.46901 * 110.99688 * 288.66273 * 10 9 8 24 24 H 1.09004 * 109.47283 * 265.97974 * 1 2 3 25 25 H 1.09001 * 109.46623 * 25.97664 * 1 2 3 26 26 H 1.08995 * 109.46912 * 145.97682 * 1 2 3 27 27 H 1.08002 * 120.01288 * 0.03609 * 3 2 1 28 28 H 1.08006 * 120.01475 * 180.02562 * 6 4 3 29 29 H 1.08005 * 119.98233 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47697 * 167.36982 * 9 8 2 31 31 H 1.09010 * 109.47159 * 47.37008 * 9 8 2 32 32 H 1.08994 * 109.49150 * 67.29287 * 11 10 9 33 33 H 1.08999 * 109.51499 * 307.22270 * 11 10 9 34 34 H 1.08994 * 109.62862 * 186.46085 * 12 11 10 35 35 H 1.09002 * 109.78852 * 65.97523 * 12 11 10 36 36 H 0.97002 * 119.99711 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.63240 * 68.25542 * 22 13 12 38 38 H 1.09000 * 109.62901 * 188.83607 * 22 13 12 39 39 H 1.09000 * 109.49737 * 292.70857 * 23 10 9 40 40 H 1.09007 * 109.49048 * 52.76253 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5823 1.1968 -0.0058 5 9 4.2585 2.3663 -0.0106 6 6 4.2733 -0.0033 -0.0061 7 6 3.5805 -1.1988 -0.0011 8 6 2.1978 -1.1972 0.0050 9 6 1.4435 -2.5018 0.0099 10 7 0.8398 -2.7134 1.3323 11 6 -0.1912 -3.7586 1.2791 12 6 -0.9185 -3.8228 2.6264 13 7 0.0829 -3.9906 3.6905 14 6 -0.0428 -4.9850 4.6235 15 1 -0.5504 -5.9036 4.3686 16 6 0.4871 -4.8146 5.8951 17 7 0.8999 -3.6262 6.2822 18 14 0.6143 -6.2718 7.0569 19 1 1.4743 -7.3175 6.4471 20 1 1.2096 -5.8288 8.3433 21 1 -0.7405 -6.8273 7.3044 22 6 1.2198 -3.0584 3.7293 23 6 1.8661 -3.0279 2.3352 24 1 -0.3634 -0.0721 1.0252 25 1 -0.3632 0.9239 -0.4501 26 1 -0.3633 -0.8517 -0.5750 27 1 1.6580 2.1325 0.0006 28 1 5.3533 -0.0048 -0.0102 29 1 4.1193 -2.1349 -0.0010 30 1 2.1297 -3.3192 -0.2113 31 1 0.6593 -2.4709 -0.7467 32 1 0.2768 -4.7209 1.0722 33 1 -0.9064 -3.5248 0.4904 34 1 -1.6044 -4.6700 2.6322 35 1 -1.4752 -2.9000 2.7897 36 1 1.2699 -3.5071 7.1709 37 1 0.8672 -2.0617 3.9947 38 1 1.9483 -3.3998 4.4647 39 1 2.3054 -4.0005 2.1135 40 1 2.6433 -2.2639 2.3121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092936332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:54:06 Heat of formation + Delta-G solvation = -9.504522 kcal Electronic energy + Delta-G solvation = -21882.432262 eV Core-core repulsion = 18611.348651 eV Total energy + Delta-G solvation = -3271.083610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.87365 -40.69455 -39.16093 -36.19725 -33.80894 -33.39345 -31.82182 -31.54709 -28.79574 -27.83411 -26.06198 -24.20137 -24.06301 -23.20566 -21.66717 -20.76869 -18.71515 -18.13999 -17.48343 -17.03071 -16.69330 -16.59312 -16.17160 -15.74216 -15.29939 -15.14377 -14.94659 -14.82591 -14.54599 -14.28351 -14.12259 -14.00934 -13.26168 -13.03208 -12.95629 -12.78217 -12.60756 -12.55263 -12.41256 -12.19411 -12.01440 -11.89970 -11.74868 -11.54815 -11.38395 -10.57702 -9.81761 -9.45036 -9.19488 -8.62145 -7.85214 -5.34047 0.18637 0.32604 1.47104 1.48985 1.55924 2.51085 2.55843 3.18351 3.30994 3.31620 3.72898 3.79197 3.83828 4.01027 4.21812 4.28061 4.34922 4.40399 4.51612 4.59946 4.69068 4.71496 4.78091 4.79959 4.91336 4.94187 4.99976 5.07948 5.09814 5.19795 5.24037 5.37198 5.41111 5.43289 5.61548 5.70159 5.73302 5.99856 6.22953 6.31454 6.41043 7.15672 7.86307 8.40441 9.20553 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.004317 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.932751 B = 6484.294533 C = 6981.502340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.037 4.037 3 C -0.166 4.166 4 C 0.079 3.921 5 F -0.150 7.150 6 C -0.165 4.165 7 C -0.086 4.086 8 C -0.094 4.094 9 C 0.096 3.904 10 N -0.530 5.530 11 C 0.056 3.944 12 C 0.144 3.856 13 N -0.614 5.614 14 C -0.264 4.264 15 H 0.068 0.932 16 C -0.051 4.051 17 N -0.939 5.939 18 Si 0.970 3.030 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.275 1.275 22 C 0.188 3.812 23 C 0.057 3.943 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.145 0.855 28 H 0.148 0.852 29 H 0.143 0.857 30 H 0.045 0.955 31 H 0.103 0.897 32 H 0.024 0.976 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.016 0.984 36 H 0.249 0.751 37 H -0.007 1.007 38 H 0.055 0.945 39 H 0.019 0.981 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 5.736 -16.735 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.038 4.038 3 C -0.184 4.184 4 C 0.060 3.940 5 F -0.129 7.129 6 C -0.184 4.184 7 C -0.104 4.104 8 C -0.095 4.095 9 C -0.031 4.031 10 N -0.254 5.254 11 C -0.073 4.073 12 C 0.018 3.982 13 N -0.339 5.339 14 C -0.394 4.394 15 H 0.086 0.914 16 C -0.246 4.246 17 N -0.585 5.585 18 Si 0.798 3.202 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.201 1.201 22 C 0.062 3.938 23 C -0.073 4.073 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.163 0.837 28 H 0.166 0.834 29 H 0.161 0.839 30 H 0.063 0.937 31 H 0.121 0.879 32 H 0.042 0.958 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.058 0.942 37 H 0.011 0.989 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.485 6.228 -16.443 17.757 hybrid contribution 0.802 -0.928 0.995 1.579 sum 3.287 5.301 -15.447 16.659 Atomic orbital electron populations 1.20752 0.89218 1.03252 1.02792 1.19792 0.97467 0.91202 0.95342 1.21199 0.92160 0.99957 1.05111 1.17904 0.90615 0.81325 1.04146 1.91456 1.80494 1.46750 1.94187 1.21254 1.01563 0.90934 1.04661 1.21134 0.93520 0.98164 0.97620 1.19870 0.93562 0.95112 1.00941 1.21058 0.97964 0.92876 0.91213 1.61878 1.13361 1.44732 1.05461 1.22487 0.94424 0.92052 0.98302 1.21145 0.91066 0.98231 0.87738 1.44383 1.23453 1.34847 1.31185 1.19525 1.34226 0.94601 0.91033 0.91440 1.25864 1.01955 0.98635 0.98177 1.70155 1.47053 1.22335 1.18967 0.85309 0.78077 0.79038 0.77808 1.20344 1.22093 1.20052 1.20675 0.89570 0.90732 0.92782 1.22581 0.93642 0.97608 0.93442 0.91533 0.90565 0.90225 0.83733 0.83429 0.83895 0.93677 0.87917 0.95753 0.88178 0.92228 0.96588 0.94152 0.98878 0.92635 0.96255 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.17 9.32 71.24 0.66 -1.51 16 2 C -0.04 -0.90 5.88 -19.87 -0.12 -1.01 16 3 C -0.17 -3.95 9.66 22.31 0.22 -3.73 16 4 C 0.08 1.98 7.30 22.37 0.16 2.15 16 5 F -0.15 -3.89 17.27 44.97 0.78 -3.11 16 6 C -0.17 -3.78 10.03 22.31 0.22 -3.55 16 7 C -0.09 -1.96 9.14 22.26 0.20 -1.75 16 8 C -0.09 -2.29 4.59 -19.86 -0.09 -2.38 16 9 C 0.10 2.30 4.41 85.56 0.38 2.67 16 10 N -0.53 -16.80 4.33 -898.84 -3.89 -20.68 16 11 C 0.06 1.78 5.61 86.38 0.48 2.26 16 12 C 0.14 5.86 6.69 86.35 0.58 6.44 16 13 N -0.61 -31.27 3.03 -697.24 -2.11 -33.38 16 14 C -0.26 -14.60 9.64 84.03 0.81 -13.79 16 15 H 0.07 3.60 7.86 -2.91 -0.02 3.58 16 16 C -0.05 -2.89 5.05 84.86 0.43 -2.46 16 17 N -0.94 -56.35 10.97 21.65 0.24 -56.11 16 18 Si 0.97 45.04 29.57 68.60 2.03 47.07 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 C 0.19 9.38 5.41 86.51 0.47 9.85 16 23 C 0.06 2.17 5.48 86.54 0.47 2.65 16 24 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.08 1.28 8.06 -2.39 -0.02 1.26 16 26 H 0.08 1.48 6.46 -2.39 -0.02 1.47 16 27 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 28 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 29 H 0.14 2.77 7.98 -2.91 -0.02 2.74 16 30 H 0.05 1.04 7.85 -2.39 -0.02 1.02 16 31 H 0.10 2.02 6.54 -2.38 -0.02 2.00 16 32 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 2.43 7.93 -2.39 -0.02 2.41 16 34 H 0.06 2.33 7.95 -2.39 -0.02 2.31 16 35 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 37 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 38 H 0.06 3.13 6.08 -2.39 -0.01 3.11 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 2.49 6.87 -2.38 -0.02 2.47 16 Total: -1.00 -64.53 323.41 2.95 -61.58 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 1.02 Total: 8.81 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 4.88 Total: -4.18 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -5.76 Total: -110.17 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.11 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.53 2.95 -61.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.078 kcal (2) G-P(sol) polarization free energy of solvation -64.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds