Wall clock time and date at job start Wed Apr 15 2020 11:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38219 * 120.01308 * 2 1 4 4 C 1.38227 * 120.02911 * 180.02562 * 3 2 1 5 5 C 1.38266 * 120.04751 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.98776 * 180.02562 * 5 4 3 7 7 N 1.46895 * 109.47321 * 89.99478 * 6 5 4 8 8 C 1.46900 * 111.00073 * 294.30246 * 7 6 5 9 9 C 1.53242 * 109.33842 * 172.74654 * 8 7 6 10 10 N 1.47080 * 108.51881 * 53.83144 * 9 8 7 11 11 C 1.36941 * 120.87910 * 128.83645 * 10 9 8 12 12 H 1.08000 * 120.00043 * 206.55573 * 11 10 9 13 13 C 1.38813 * 119.99987 * 26.55742 * 11 10 9 14 14 N 1.31618 * 120.00157 * 17.02368 * 13 11 10 15 15 Si 1.86799 * 119.99971 * 197.02673 * 13 11 10 16 16 H 1.48501 * 109.47233 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47278 * 120.00030 * 15 13 11 18 18 H 1.48496 * 109.47414 * 239.99885 * 15 13 11 19 19 C 1.47073 * 118.23925 * 308.81283 * 10 9 8 20 20 C 1.46899 * 110.99908 * 170.00095 * 7 6 5 21 21 C 1.38175 * 120.02603 * 359.97438 * 5 4 3 22 22 C 1.38442 * 120.01444 * 180.02562 * 2 1 3 23 23 F 1.35095 * 120.02318 * 359.95506 * 22 2 1 24 24 H 1.08996 * 109.47045 * 269.97777 * 1 2 3 25 25 H 1.09000 * 109.47116 * 29.97875 * 1 2 3 26 26 H 1.08995 * 109.47068 * 149.97778 * 1 2 3 27 27 H 1.08006 * 119.98752 * 0.04116 * 3 2 1 28 28 H 1.07992 * 119.97580 * 180.27596 * 4 3 2 29 29 H 1.09001 * 109.46959 * 209.99801 * 6 5 4 30 30 H 1.09006 * 109.46722 * 329.99109 * 6 5 4 31 31 H 1.08996 * 109.49337 * 292.70743 * 8 7 6 32 32 H 1.08997 * 109.49317 * 52.78544 * 8 7 6 33 33 H 1.08995 * 109.62761 * 294.11819 * 9 8 7 34 34 H 1.09004 * 109.62432 * 173.54051 * 9 8 7 35 35 H 0.97003 * 120.00084 * 179.97438 * 14 13 11 36 36 H 1.09001 * 109.63060 * 291.47703 * 19 10 9 37 37 H 1.08998 * 109.78814 * 170.99311 * 19 10 9 38 38 H 1.08998 * 109.49331 * 307.21584 * 20 7 6 39 39 H 1.09007 * 109.49331 * 67.29228 * 20 7 6 40 40 H 1.08001 * 120.01503 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2733 0.0006 -0.0016 6 6 5.7803 0.0026 -0.0016 7 7 6.2700 0.0021 1.3833 8 6 5.9117 1.2510 2.0688 9 6 6.2777 1.1384 3.5526 10 7 7.6941 0.7560 3.6568 11 6 8.5568 1.4644 4.4500 12 1 9.6118 1.4816 4.2195 13 6 8.0753 2.1603 5.5504 14 7 6.8821 1.8849 6.0327 15 14 9.1210 3.4877 6.3466 16 1 10.4115 3.6030 5.6210 17 1 8.4019 4.7858 6.2881 18 1 9.3810 3.1294 7.7640 19 6 8.1592 -0.4075 2.8868 20 6 7.7191 -0.2341 1.4292 21 6 3.5843 -1.1971 -0.0016 22 6 2.1995 -1.1988 -0.0005 23 9 1.5248 -2.3692 -0.0001 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6583 2.1322 0.0007 28 1 4.1199 2.1328 0.0040 29 1 6.1448 -0.8865 -0.5162 30 1 6.1424 0.8935 -0.5148 31 1 6.4582 2.0812 1.6214 32 1 4.8403 1.4253 1.9706 33 1 5.6572 0.3776 4.0261 34 1 6.1209 2.0996 4.0423 35 1 6.5458 2.3709 6.8019 36 1 7.7196 -1.3170 3.2962 37 1 9.2461 -0.4720 2.9359 38 1 7.9585 -1.1368 0.8671 39 1 8.2405 0.6168 0.9906 40 1 4.1255 -2.1317 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:54:07 Heat of formation + Delta-G solvation = 6.567454 kcal Electronic energy + Delta-G solvation = -21648.081612 eV Core-core repulsion = 18377.694935 eV Total energy + Delta-G solvation = -3270.386677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -48.85823 -39.52565 -37.78455 -34.75712 -32.94085 -31.15010 -30.58922 -29.85685 -28.50877 -26.18224 -24.08829 -23.06980 -22.43104 -22.13173 -20.80684 -19.07399 -17.01037 -16.80268 -16.48431 -15.71318 -15.64388 -15.17246 -14.54495 -14.46112 -14.06272 -13.80281 -13.47326 -13.42353 -13.36111 -13.08017 -12.95786 -12.60858 -12.29516 -11.86242 -11.61723 -11.44411 -11.35511 -11.08255 -10.92948 -10.75024 -10.42971 -10.29101 -10.04564 -9.74678 -9.61196 -8.83400 -8.52784 -8.48611 -7.82028 -6.65615 -5.77118 -3.18296 1.15336 1.24906 3.37194 3.45074 3.47205 3.52819 4.24636 4.48031 4.54313 4.64017 4.72686 4.93659 5.07429 5.30004 5.39539 5.44355 5.45431 5.47496 5.50948 5.61997 5.72936 5.91060 5.94011 5.97025 6.08913 6.14179 6.16309 6.25435 6.32941 6.33987 6.53480 6.57369 6.71538 6.92851 6.94160 7.25610 7.57512 7.66329 7.71422 7.82880 8.44348 9.22248 9.85778 10.44379 11.31687 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025615 B = 0.004100 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.830071 B = 6828.034654 C = 7302.073526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.126 4.126 3 C -0.094 4.094 4 C -0.117 4.117 5 C -0.043 4.043 6 C 0.089 3.911 7 N -0.527 5.527 8 C 0.032 3.968 9 C 0.179 3.821 10 N -0.596 5.596 11 C -0.252 4.252 12 H 0.066 0.934 13 C 0.001 3.999 14 N -0.903 5.903 15 Si 0.901 3.099 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.290 1.290 19 C 0.149 3.851 20 C 0.045 3.955 21 C -0.129 4.129 22 C 0.092 3.908 23 F -0.142 7.142 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.024 0.976 32 H 0.065 0.935 33 H 0.025 0.975 34 H 0.088 0.912 35 H 0.253 0.747 36 H 0.025 0.975 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.028 0.972 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.146 -2.822 -14.666 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.127 4.127 3 C -0.112 4.112 4 C -0.136 4.136 5 C -0.044 4.044 6 C -0.039 4.039 7 N -0.252 5.252 8 C -0.097 4.097 9 C 0.053 3.947 10 N -0.319 5.319 11 C -0.381 4.381 12 H 0.084 0.916 13 C -0.197 4.197 14 N -0.548 5.548 15 Si 0.731 3.269 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.217 1.217 19 C 0.022 3.978 20 C -0.084 4.084 21 C -0.148 4.148 22 C 0.073 3.927 23 F -0.121 7.121 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.047 0.953 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.438 -3.175 -14.255 17.388 hybrid contribution 0.747 1.128 0.115 1.358 sum -8.690 -2.047 -14.140 16.723 Atomic orbital electron populations 1.20695 0.90468 1.02922 1.02753 1.19881 0.96808 0.92065 1.03945 1.20853 0.93972 0.96892 0.99474 1.21149 0.94065 0.98033 1.00370 1.19626 0.95776 0.92096 0.96917 1.21074 0.90005 1.01158 0.91639 1.62003 1.14281 1.36781 1.12151 1.23002 0.99160 0.88510 0.99060 1.20850 0.84301 1.00960 0.88588 1.44140 1.06546 1.29520 1.51694 1.19243 0.90804 1.24033 1.04052 0.91597 1.25020 0.97272 1.01288 0.96136 1.70045 1.18627 1.41585 1.24509 0.86239 0.79744 0.81919 0.78979 1.20313 1.21591 1.21709 1.20964 0.97078 0.90931 0.88826 1.22642 0.86692 0.98979 1.00136 1.20960 0.91771 0.99530 1.02524 1.17504 0.90012 0.80798 1.04408 1.91456 1.80394 1.46159 1.94054 0.90871 0.91177 0.91458 0.85231 0.85522 0.90311 0.94224 0.95763 0.91670 0.95653 0.89399 0.93678 0.95691 0.92583 0.91963 0.95337 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.84 36.01 0.35 -0.70 16 2 C -0.13 -1.52 5.89 -104.55 -0.62 -2.13 16 3 C -0.09 -1.08 9.70 -39.59 -0.38 -1.46 16 4 C -0.12 -1.48 7.86 -39.58 -0.31 -1.80 16 5 C -0.04 -0.59 4.89 -104.63 -0.51 -1.10 16 6 C 0.09 1.25 5.12 -4.98 -0.03 1.22 16 7 N -0.53 -9.35 4.62 -235.76 -1.09 -10.43 16 8 C 0.03 0.62 5.33 -3.70 -0.02 0.60 16 9 C 0.18 4.39 5.42 -3.60 -0.02 4.37 16 10 N -0.60 -15.25 3.04 -172.02 -0.52 -15.77 16 11 C -0.25 -6.98 9.63 -15.06 -0.15 -7.13 16 12 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 13 C 0.00 0.03 4.94 -17.43 -0.09 -0.05 16 14 N -0.90 -26.47 11.15 55.49 0.62 -25.85 16 15 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 C 0.15 3.19 6.69 -3.61 -0.02 3.16 16 20 C 0.04 0.79 5.62 -3.70 -0.02 0.77 16 21 C -0.13 -1.74 9.68 -39.52 -0.38 -2.13 16 22 C 0.09 1.24 7.24 -39.42 -0.29 0.95 16 23 F -0.14 -1.94 16.48 2.25 0.04 -1.90 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.07 0.62 7.64 -51.93 -0.40 0.22 16 27 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 28 H 0.13 1.48 7.92 -52.49 -0.42 1.07 16 29 H 0.08 0.98 7.91 -51.93 -0.41 0.57 16 30 H 0.04 0.54 8.07 -51.93 -0.42 0.12 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 1.19 5.65 -51.93 -0.29 0.89 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 2.38 6.12 -51.93 -0.32 2.06 16 35 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 1.15 7.96 -51.93 -0.41 0.73 16 38 H 0.06 0.93 7.99 -51.93 -0.41 0.52 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 324.40 15.07 4.89 4.89 Total: -1.00 -30.29 324.40 -9.58 -39.87 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.01 Total: -2.08 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -2.48 Total: -5.41 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.99 Total: -52.06 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.29 -9.58 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.439 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds