Wall clock time and date at job start Wed Apr 15 2020 11:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38219 * 120.01308 * 2 1 4 4 C 1.38227 * 120.02911 * 180.02562 * 3 2 1 5 5 C 1.38266 * 120.04751 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.98776 * 180.02562 * 5 4 3 7 7 N 1.46895 * 109.47321 * 89.99478 * 6 5 4 8 8 C 1.46900 * 111.00073 * 294.30246 * 7 6 5 9 9 C 1.53242 * 109.33842 * 172.74654 * 8 7 6 10 10 N 1.47080 * 108.51881 * 53.83144 * 9 8 7 11 11 C 1.36941 * 120.87910 * 128.83645 * 10 9 8 12 12 H 1.08000 * 120.00043 * 206.55573 * 11 10 9 13 13 C 1.38813 * 119.99987 * 26.55742 * 11 10 9 14 14 N 1.31618 * 120.00157 * 17.02368 * 13 11 10 15 15 Si 1.86799 * 119.99971 * 197.02673 * 13 11 10 16 16 H 1.48501 * 109.47233 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47278 * 120.00030 * 15 13 11 18 18 H 1.48496 * 109.47414 * 239.99885 * 15 13 11 19 19 C 1.47073 * 118.23925 * 308.81283 * 10 9 8 20 20 C 1.46899 * 110.99908 * 170.00095 * 7 6 5 21 21 C 1.38175 * 120.02603 * 359.97438 * 5 4 3 22 22 C 1.38442 * 120.01444 * 180.02562 * 2 1 3 23 23 F 1.35095 * 120.02318 * 359.95506 * 22 2 1 24 24 H 1.08996 * 109.47045 * 269.97777 * 1 2 3 25 25 H 1.09000 * 109.47116 * 29.97875 * 1 2 3 26 26 H 1.08995 * 109.47068 * 149.97778 * 1 2 3 27 27 H 1.08006 * 119.98752 * 0.04116 * 3 2 1 28 28 H 1.07992 * 119.97580 * 180.27596 * 4 3 2 29 29 H 1.09001 * 109.46959 * 209.99801 * 6 5 4 30 30 H 1.09006 * 109.46722 * 329.99109 * 6 5 4 31 31 H 1.08996 * 109.49337 * 292.70743 * 8 7 6 32 32 H 1.08997 * 109.49317 * 52.78544 * 8 7 6 33 33 H 1.08995 * 109.62761 * 294.11819 * 9 8 7 34 34 H 1.09004 * 109.62432 * 173.54051 * 9 8 7 35 35 H 0.97003 * 120.00084 * 179.97438 * 14 13 11 36 36 H 1.09001 * 109.63060 * 291.47703 * 19 10 9 37 37 H 1.08998 * 109.78814 * 170.99311 * 19 10 9 38 38 H 1.08998 * 109.49331 * 307.21584 * 20 7 6 39 39 H 1.09007 * 109.49331 * 67.29228 * 20 7 6 40 40 H 1.08001 * 120.01503 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2733 0.0006 -0.0016 6 6 5.7803 0.0026 -0.0016 7 7 6.2700 0.0021 1.3833 8 6 5.9117 1.2510 2.0688 9 6 6.2777 1.1384 3.5526 10 7 7.6941 0.7560 3.6568 11 6 8.5568 1.4644 4.4500 12 1 9.6118 1.4816 4.2195 13 6 8.0753 2.1603 5.5504 14 7 6.8821 1.8849 6.0327 15 14 9.1210 3.4877 6.3466 16 1 10.4115 3.6030 5.6210 17 1 8.4019 4.7858 6.2881 18 1 9.3810 3.1294 7.7640 19 6 8.1592 -0.4075 2.8868 20 6 7.7191 -0.2341 1.4292 21 6 3.5843 -1.1971 -0.0016 22 6 2.1995 -1.1988 -0.0005 23 9 1.5248 -2.3692 -0.0001 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6583 2.1322 0.0007 28 1 4.1199 2.1328 0.0040 29 1 6.1448 -0.8865 -0.5162 30 1 6.1424 0.8935 -0.5148 31 1 6.4582 2.0812 1.6214 32 1 4.8403 1.4253 1.9706 33 1 5.6572 0.3776 4.0261 34 1 6.1209 2.0996 4.0423 35 1 6.5458 2.3709 6.8019 36 1 7.7196 -1.3170 3.2962 37 1 9.2461 -0.4720 2.9359 38 1 7.9585 -1.1368 0.8671 39 1 8.2405 0.6168 0.9906 40 1 4.1255 -2.1317 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092936509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:54:06 Heat of formation + Delta-G solvation = -10.736090 kcal Electronic energy + Delta-G solvation = -21648.831950 eV Core-core repulsion = 18377.694935 eV Total energy + Delta-G solvation = -3271.137015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.87940 -40.61044 -39.23292 -36.37059 -34.24752 -32.87751 -31.77973 -31.34348 -29.79246 -27.69497 -25.56623 -24.39083 -23.93382 -23.49427 -21.83285 -20.81108 -18.74128 -18.01504 -17.51253 -17.05382 -16.66666 -16.59572 -16.21393 -15.84367 -15.41717 -15.29646 -14.94488 -14.80441 -14.75286 -14.25357 -14.19235 -13.62732 -13.42629 -13.21569 -13.05398 -12.78967 -12.67394 -12.60202 -12.38839 -12.27754 -12.01780 -12.00202 -11.81142 -11.55935 -11.38579 -10.60176 -9.80394 -9.52223 -9.21682 -8.68429 -7.87854 -5.32909 0.17294 0.28723 1.46146 1.47524 1.58532 2.50121 2.52668 3.18642 3.27414 3.29148 3.69134 3.70830 3.81325 3.99029 4.18709 4.26298 4.33539 4.37363 4.41525 4.57056 4.66228 4.68259 4.69849 4.75802 4.76549 4.87700 4.90686 5.03533 5.09283 5.18561 5.21055 5.24826 5.36595 5.41823 5.56717 5.61324 5.67264 5.97959 6.18638 6.25295 6.37255 7.12791 7.83537 8.38003 9.19252 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025615 B = 0.004100 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.830071 B = 6828.034654 C = 7302.073526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.128 4.128 3 C -0.094 4.094 4 C -0.123 4.123 5 C -0.059 4.059 6 C 0.094 3.906 7 N -0.540 5.540 8 C 0.052 3.948 9 C 0.187 3.813 10 N -0.615 5.615 11 C -0.264 4.264 12 H 0.069 0.931 13 C -0.051 4.051 14 N -0.937 5.937 15 Si 0.969 3.031 16 H -0.266 1.266 17 H -0.289 1.289 18 H -0.293 1.293 19 C 0.143 3.857 20 C 0.056 3.944 21 C -0.138 4.138 22 C 0.071 3.929 23 F -0.148 7.148 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.157 0.843 28 H 0.136 0.864 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.023 0.977 32 H 0.079 0.921 33 H -0.009 1.009 34 H 0.056 0.944 35 H 0.250 0.750 36 H 0.012 0.988 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.029 0.971 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.149 -2.174 -16.385 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.129 4.129 3 C -0.111 4.111 4 C -0.142 4.142 5 C -0.059 4.059 6 C -0.032 4.032 7 N -0.265 5.265 8 C -0.077 4.077 9 C 0.061 3.939 10 N -0.339 5.339 11 C -0.394 4.394 12 H 0.087 0.913 13 C -0.247 4.247 14 N -0.584 5.584 15 Si 0.797 3.203 16 H -0.190 1.190 17 H -0.215 1.215 18 H -0.220 1.220 19 C 0.017 3.983 20 C -0.073 4.073 21 C -0.157 4.157 22 C 0.052 3.948 23 F -0.127 7.127 24 H 0.095 0.905 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.175 0.825 28 H 0.154 0.846 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.097 0.903 33 H 0.009 0.991 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.030 0.970 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.047 0.953 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.431 -2.548 -16.012 18.757 hybrid contribution 0.710 0.850 0.633 1.276 sum -8.720 -1.698 -15.379 17.760 Atomic orbital electron populations 1.20769 0.88675 1.04096 1.03290 1.20248 0.98282 0.91703 1.02656 1.21184 0.93750 0.97832 0.98378 1.21372 0.94791 0.98081 0.99952 1.19654 0.95625 0.92502 0.98156 1.21102 0.90253 1.02661 0.89229 1.61901 1.14335 1.35462 1.14793 1.22606 0.99858 0.89570 0.95666 1.20589 0.83721 0.97989 0.91600 1.44431 1.06599 1.30858 1.51985 1.19600 0.91361 1.24211 1.04251 0.91307 1.25805 0.98538 1.03391 0.96921 1.70211 1.20420 1.42716 1.25037 0.85187 0.78564 0.78899 0.77669 1.18992 1.21525 1.21967 1.21138 0.97477 0.88949 0.90738 1.22484 0.86712 1.00651 0.97447 1.21074 0.92068 0.99844 1.02705 1.17755 0.90286 0.81230 1.05544 1.91436 1.80462 1.46551 1.94223 0.90532 0.88922 0.91444 0.82515 0.84604 0.88323 0.93080 0.95871 0.90314 0.99098 0.92553 0.94086 0.96977 0.91930 0.88431 0.95305 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.84 71.24 0.70 -1.16 16 2 C -0.13 -2.84 5.89 -19.82 -0.12 -2.96 16 3 C -0.09 -1.93 9.70 22.26 0.22 -1.71 16 4 C -0.12 -2.85 7.86 22.27 0.18 -2.67 16 5 C -0.06 -1.49 4.89 -19.87 -0.10 -1.59 16 6 C 0.09 2.41 5.12 85.56 0.44 2.84 16 7 N -0.54 -18.24 4.62 -899.82 -4.16 -22.40 16 8 C 0.05 2.01 5.33 86.38 0.46 2.48 16 9 C 0.19 9.42 5.42 86.35 0.47 9.89 16 10 N -0.61 -31.88 3.04 -698.14 -2.12 -34.00 16 11 C -0.26 -14.79 9.63 84.03 0.81 -13.98 16 12 H 0.07 3.73 7.88 -2.91 -0.02 3.70 16 13 C -0.05 -2.91 4.94 84.86 0.42 -2.49 16 14 N -0.94 -56.55 11.15 21.65 0.24 -56.31 16 15 Si 0.97 45.10 29.59 68.60 2.03 47.13 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 17 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 19 C 0.14 6.05 6.69 86.35 0.58 6.63 16 20 C 0.06 1.87 5.62 86.38 0.49 2.35 16 21 C -0.14 -3.58 9.68 22.31 0.22 -3.36 16 22 C 0.07 1.84 7.24 22.38 0.16 2.00 16 23 F -0.15 -3.97 16.48 44.97 0.74 -3.23 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.09 1.11 8.09 -2.39 -0.02 1.09 16 26 H 0.07 1.12 7.64 -2.39 -0.02 1.10 16 27 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 28 H 0.14 2.84 7.92 -2.91 -0.02 2.82 16 29 H 0.10 2.13 7.91 -2.39 -0.02 2.11 16 30 H 0.05 1.22 8.07 -2.38 -0.02 1.20 16 31 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 2.80 5.65 -2.39 -0.01 2.79 16 33 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.06 3.16 6.12 -2.38 -0.01 3.15 16 35 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.06 2.52 7.96 -2.39 -0.02 2.50 16 38 H 0.10 2.59 7.99 -2.39 -0.02 2.57 16 39 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -66.29 324.40 2.67 -63.63 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.02 Total: 8.91 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 4.91 Total: -3.73 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -6.04 Total: -112.71 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.74 Total: -3.23 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -66.29 2.67 -63.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.889 kcal (2) G-P(sol) polarization free energy of solvation -66.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds