Wall clock time and date at job start Wed Apr 15 2020 11:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00063 * 2 1 4 4 H 1.48508 * 109.46968 * 275.54573 * 3 2 1 5 5 H 1.48493 * 109.47347 * 35.54622 * 3 2 1 6 6 H 1.48497 * 109.47475 * 155.54808 * 3 2 1 7 7 C 1.37873 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00475 * 348.93559 * 7 2 1 9 9 C 1.50707 * 120.00000 * 168.93093 * 7 2 1 10 10 C 1.53000 * 115.55220 * 323.07571 * 9 7 2 11 11 O 1.45196 * 109.47460 * 184.00570 * 10 9 7 12 12 C 1.34752 * 117.00229 * 184.68178 * 11 10 9 13 13 O 1.21538 * 119.99910 * 354.45487 * 12 11 10 14 14 C 1.47255 * 120.00469 * 174.72704 * 12 11 10 15 15 C 1.38326 * 126.45973 * 4.61115 * 14 12 11 16 16 N 1.34203 * 108.40207 * 179.82627 * 15 14 12 17 17 H 0.96999 * 125.38342 * 180.16349 * 16 15 14 18 18 C 1.37833 * 109.22683 * 0.43867 * 16 15 14 19 19 C 1.46644 * 125.85005 * 179.74718 * 18 16 15 20 20 O 1.21601 * 120.00376 * 179.97438 * 19 18 16 21 21 O 1.34870 * 119.99776 * 359.97438 * 19 18 16 22 22 C 1.36422 * 108.30493 * 359.72870 * 18 16 15 23 23 C 1.53000 * 117.49756 * 108.74499 * 9 7 2 24 24 C 1.53004 * 117.49973 * 177.40173 * 9 7 2 25 25 H 0.96997 * 120.00153 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47109 * 64.00324 * 10 9 7 27 27 H 1.09004 * 109.46907 * 304.00981 * 10 9 7 28 28 H 1.08001 * 125.79839 * 359.97438 * 15 14 12 29 29 H 0.96706 * 116.99923 * 179.97438 * 21 19 18 30 30 H 1.07991 * 126.50760 * 179.97438 * 22 18 16 31 31 H 1.09005 * 117.49800 * 215.00775 * 23 9 7 32 32 H 1.08998 * 117.50097 * 0.02562 * 23 9 7 33 33 H 1.08999 * 117.49897 * 359.97438 * 24 9 7 34 34 H 1.08998 * 117.49762 * 144.97424 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3795 2.1140 -1.3936 5 1 1.5102 2.6160 0.8139 6 1 3.6004 1.4092 0.5795 7 6 2.0045 -1.1940 0.0005 8 1 1.4796 -2.1206 0.1804 9 6 3.4906 -1.2063 -0.2500 10 6 3.9945 -0.1933 -1.2800 11 8 5.4191 -0.3819 -1.4875 12 6 6.0412 0.4976 -2.2969 13 8 5.3950 1.3358 -2.8945 14 6 7.5034 0.4396 -2.4621 15 6 8.3542 -0.5101 -1.9258 16 7 9.6076 -0.2195 -2.3071 17 1 10.3989 -0.7283 -2.0707 18 6 9.5936 0.9198 -3.0827 19 6 10.7654 1.5626 -3.6861 20 8 10.6300 2.5692 -4.3547 21 8 11.9935 1.0372 -3.4995 22 6 8.3027 1.3470 -3.1933 23 6 4.4043 -1.5222 0.9358 24 6 4.2083 -2.5555 -0.1764 25 1 -0.4850 0.8400 0.0004 26 1 3.8111 0.8174 -0.9154 27 1 3.4673 -0.3407 -2.2226 28 1 8.0594 -1.3450 -1.3075 29 1 12.7353 1.4958 -3.9173 30 1 7.9571 2.2142 -3.7363 31 1 5.3645 -1.0083 0.9822 32 1 3.9307 -1.7216 1.8970 33 1 3.6058 -3.4342 0.0537 34 1 5.0392 -2.7216 -0.8620 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601063482.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:55:36 Heat of formation + Delta-G solvation = -92.697349 kcal Electronic energy + Delta-G solvation = -21025.905417 eV Core-core repulsion = 17505.289749 eV Total energy + Delta-G solvation = -3520.615668 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.93565 -40.11146 -39.55377 -37.08331 -36.51707 -35.21968 -32.27714 -31.83983 -30.35223 -27.79364 -25.58139 -24.35140 -23.25422 -21.40920 -20.84218 -20.24171 -19.20096 -19.01262 -18.11440 -17.07839 -16.72779 -16.27421 -15.93678 -15.76705 -15.38644 -14.75861 -14.37491 -14.00348 -13.78477 -13.68668 -13.24686 -12.88198 -12.72354 -12.49327 -12.03995 -11.77127 -11.23094 -11.10402 -10.77971 -10.51581 -10.44908 -10.28002 -9.71636 -9.54886 -9.51984 -9.26285 -8.86433 -8.70028 -8.35241 -6.25516 -4.20747 0.82227 1.46361 2.38172 2.60714 2.62573 3.17868 3.26864 3.33440 3.36454 3.39097 4.28700 4.56088 4.68852 4.72245 4.75013 5.10706 5.32325 5.53730 5.55301 5.71995 5.82568 5.97796 6.02099 6.08765 6.21943 6.24508 6.51687 6.56903 6.72445 6.80276 6.96534 7.01469 7.20296 7.43035 7.61591 8.17637 8.40072 8.79058 9.36844 10.86411 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.032032 B = 0.004074 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.927934 B = 6871.008526 C = 7478.748880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.079 3.921 3 Si 0.872 3.128 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.484 4.484 8 H 0.086 0.914 9 C 0.005 3.995 10 C 0.089 3.911 11 O -0.351 6.351 12 C 0.528 3.472 13 O -0.512 6.512 14 C -0.217 4.217 15 C 0.118 3.882 16 N -0.516 5.516 17 H 0.430 0.570 18 C -0.059 4.059 19 C 0.557 3.443 20 O -0.502 6.502 21 O -0.522 6.522 22 C -0.026 4.026 23 C -0.200 4.200 24 C -0.178 4.178 25 H 0.269 0.731 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.198 0.802 29 H 0.419 0.581 30 H 0.165 0.835 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.490 -1.330 -3.986 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.185 1.185 7 C -0.521 4.521 8 H 0.104 0.896 9 C 0.004 3.996 10 C 0.017 3.983 11 O -0.267 6.267 12 C 0.372 3.628 13 O -0.401 6.401 14 C -0.225 4.225 15 C -0.026 4.026 16 N -0.111 5.111 17 H 0.269 0.731 18 C -0.167 4.167 19 C 0.401 3.599 20 O -0.390 6.390 21 O -0.335 6.335 22 C -0.051 4.051 23 C -0.237 4.237 24 C -0.215 4.215 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.215 0.785 29 H 0.278 0.722 30 H 0.183 0.817 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 22.871 -0.936 -4.178 23.268 hybrid contribution 1.110 1.042 -0.161 1.532 sum 23.981 0.106 -4.339 24.371 Atomic orbital electron populations 1.69888 1.06273 1.27522 1.48252 1.24998 0.94696 0.99004 0.93878 0.87158 0.79807 0.83868 0.78968 1.19769 1.21765 1.18453 1.20299 0.87363 0.95312 1.49096 0.89635 1.19376 0.93981 0.92712 0.93520 1.23539 0.74090 1.00240 1.00431 1.86466 1.27193 1.51590 1.61461 1.20062 0.87083 0.78797 0.76810 1.90855 1.66967 1.36596 1.45720 1.18844 0.90816 1.01850 1.10950 1.22870 0.82262 0.99695 0.97758 1.41767 1.09391 1.21619 1.38328 0.73059 1.18764 0.92918 0.95198 1.09830 1.19396 0.81691 0.81445 0.77329 1.90993 1.86025 1.24262 1.37710 1.84541 1.17653 1.58403 1.72873 1.21154 0.88821 0.98627 0.96483 1.23102 1.00992 1.04879 0.94772 1.22730 1.02660 0.93660 1.02487 0.92111 0.91771 0.90518 0.78507 0.72164 0.81743 0.90974 0.89783 0.90034 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.38 13.96 55.43 0.77 -25.61 16 2 C 0.08 2.23 5.43 -17.82 -0.10 2.13 16 3 Si 0.87 22.00 24.24 -169.99 -4.12 17.88 16 4 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.30 6.38 56.52 0.36 -5.93 16 7 C -0.48 -13.35 9.57 -34.44 -0.33 -13.68 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 9 C 0.01 0.12 1.81 -155.65 -0.28 -0.16 16 10 C 0.09 2.03 4.24 37.16 0.16 2.19 16 11 O -0.35 -6.73 8.32 -40.63 -0.34 -7.07 16 12 C 0.53 9.72 7.94 34.40 0.27 9.99 16 13 O -0.51 -11.16 16.71 -19.30 -0.32 -11.48 16 14 C -0.22 -2.99 6.13 -105.03 -0.64 -3.63 16 15 C 0.12 1.10 11.76 -16.48 -0.19 0.90 16 16 N -0.52 -3.85 6.01 -9.31 -0.06 -3.91 16 17 H 0.43 1.71 8.96 -40.82 -0.37 1.34 16 18 C -0.06 -0.61 7.02 -82.43 -0.58 -1.19 16 19 C 0.56 5.43 8.31 34.12 0.28 5.72 16 20 O -0.50 -6.52 17.65 -19.34 -0.34 -6.86 16 21 O -0.52 -3.05 13.44 -40.96 -0.55 -3.60 16 22 C -0.03 -0.33 10.37 -39.07 -0.41 -0.74 16 23 C -0.20 -4.09 9.66 -26.69 -0.26 -4.35 16 24 C -0.18 -3.52 9.63 -26.69 -0.26 -3.78 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.06 1.57 2.51 -51.93 -0.13 1.44 16 27 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 28 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.42 0.65 9.11 45.56 0.42 1.07 16 30 H 0.17 2.18 8.06 -52.49 -0.42 1.76 16 31 H 0.07 1.36 7.79 -51.93 -0.40 0.95 16 32 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.08 1.38 7.53 -51.93 -0.39 0.99 16 LS Contribution 305.60 15.07 4.61 4.61 Total: -1.00 -35.10 305.60 -5.27 -40.37 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -2.59 Total: 2.27 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.33 Total: -6.60 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 0.72 Total: -29.51 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -1.55 Total: -29.01 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.12 Total: 17.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.10 -5.27 -40.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063482.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.330 kcal (2) G-P(sol) polarization free energy of solvation -35.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds