Wall clock time and date at job start Wed Apr 15 2020 11:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99704 * 2 1 4 4 H 1.48497 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46997 * 300.00305 * 3 2 1 6 6 H 1.48500 * 109.47030 * 59.99615 * 3 2 1 7 7 C 1.37878 * 120.00556 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00220 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99535 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.64102 * 298.31030 * 9 7 2 11 11 C 1.55156 * 110.86727 * 175.06405 * 9 7 2 12 12 C 1.55133 * 101.48294 * 205.89791 * 11 9 7 13 13 N 1.47425 * 104.72124 * 37.29467 * 12 11 9 14 14 C 1.34781 * 125.64526 * 155.82056 * 13 12 11 15 15 O 1.21585 * 119.99768 * 178.00354 * 14 13 12 16 16 C 1.47522 * 119.99810 * 357.99674 * 14 13 12 17 17 C 1.37973 * 126.74494 * 188.09463 * 16 14 13 18 18 O 1.33449 * 108.41487 * 179.83251 * 17 16 14 19 19 C 1.34970 * 109.87602 * 0.44747 * 18 17 16 20 20 C 1.41481 * 125.69627 * 179.72313 * 19 18 17 21 21 O 1.21416 * 120.00058 * 359.97438 * 20 19 18 22 22 C 1.36566 * 108.60166 * 359.72409 * 19 18 17 23 23 C 1.47021 * 108.70569 * 335.55253 * 13 12 11 24 24 H 0.96997 * 120.00098 * 359.97438 * 1 2 3 25 25 H 0.96702 * 113.99913 * 61.68782 * 10 9 7 26 26 H 1.09003 * 111.00869 * 324.13210 * 11 9 7 27 27 H 1.08997 * 111.00709 * 87.95382 * 11 9 7 28 28 H 1.09002 * 110.49617 * 278.45374 * 12 11 9 29 29 H 1.08993 * 110.34421 * 156.06102 * 12 11 9 30 30 H 1.07994 * 125.79010 * 359.97258 * 17 16 14 31 31 H 1.08004 * 119.99283 * 180.02562 * 20 19 18 32 32 H 1.08004 * 126.69371 * 180.02562 * 22 19 18 33 33 H 1.08999 * 109.87917 * 120.70532 * 23 13 12 34 34 H 1.08995 * 109.88616 * 241.71719 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 8 0.4496 -2.6191 1.1752 11 6 2.2258 -3.6999 -0.1269 12 6 1.3113 -4.7739 -0.7724 13 7 0.4622 -4.0247 -1.7164 14 6 -0.1443 -4.5382 -2.8051 15 8 -0.8536 -3.8321 -3.4955 16 6 0.0528 -5.9567 -3.1590 17 6 -0.3669 -6.5854 -4.3132 18 8 0.0067 -7.8653 -4.2557 19 6 0.6517 -8.1034 -3.0943 20 6 1.1849 -9.3487 -2.6863 21 8 1.0792 -10.3199 -3.4074 22 6 0.7037 -6.9413 -2.3787 23 6 0.3813 -2.6263 -1.2700 24 1 -0.4850 0.8400 0.0004 25 1 -0.2285 -1.9350 1.2606 26 1 3.0658 -3.4553 -0.7771 27 1 2.5748 -4.0237 0.8536 28 1 0.6978 -5.2592 -0.0132 29 1 1.9111 -5.5118 -1.3051 30 1 -0.9043 -6.1202 -5.1262 31 1 1.6852 -9.4357 -1.7331 32 1 1.1542 -6.8013 -1.4072 33 1 0.7627 -1.9660 -2.0489 34 1 -0.6528 -2.3697 -1.0403 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355113582.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:55:35 Heat of formation + Delta-G solvation = -110.294193 kcal Electronic energy + Delta-G solvation = -21593.983941 eV Core-core repulsion = 18072.605217 eV Total energy + Delta-G solvation = -3521.378724 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.94766 -40.95292 -39.79906 -38.90555 -36.21968 -34.53897 -34.22619 -31.93569 -31.47836 -29.68227 -27.36928 -25.67030 -25.17245 -23.18068 -22.50988 -21.36383 -19.97997 -19.10084 -18.62724 -17.83225 -17.61097 -17.33724 -16.95105 -16.58513 -16.48126 -16.19228 -15.60336 -15.01555 -14.88897 -14.82211 -14.68659 -14.28809 -13.76784 -13.67639 -13.43102 -13.21759 -12.86379 -12.39988 -12.32569 -12.24416 -12.01959 -11.35936 -11.20512 -11.14207 -11.04673 -10.64925 -10.27618 -9.95912 -9.55870 -8.26830 -6.42306 -0.36406 0.38520 1.39967 1.44147 1.54013 1.63292 1.84126 2.02203 2.22809 2.38341 3.00528 3.27354 3.54110 3.68067 3.78951 4.00103 4.10563 4.13222 4.24586 4.43803 4.54021 4.66506 4.69504 4.70383 4.98373 5.03422 5.13034 5.23829 5.37870 5.50496 5.59410 5.75059 6.06399 6.43388 6.57648 6.67161 7.06836 7.27722 7.35312 8.79213 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.034014 B = 0.004184 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.002937 B = 6690.282491 C = 7098.341801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.557 4.557 8 H 0.068 0.932 9 C 0.232 3.768 10 O -0.585 6.585 11 C -0.113 4.113 12 C 0.090 3.910 13 N -0.607 5.607 14 C 0.585 3.415 15 O -0.598 6.598 16 C -0.264 4.264 17 C 0.094 3.906 18 O -0.152 6.152 19 C -0.142 4.142 20 C 0.422 3.578 21 O -0.503 6.503 22 C -0.084 4.084 23 C 0.122 3.878 24 H 0.269 0.731 25 H 0.375 0.625 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.243 0.757 31 H 0.201 0.799 32 H 0.211 0.789 33 H 0.033 0.967 34 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.048 -14.432 -1.679 15.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.595 4.595 8 H 0.086 0.914 9 C 0.191 3.809 10 O -0.393 6.393 11 C -0.151 4.151 12 C -0.030 4.030 13 N -0.338 5.338 14 C 0.376 3.624 15 O -0.481 6.481 16 C -0.268 4.268 17 C 0.019 3.981 18 O -0.044 6.044 19 C -0.191 4.191 20 C 0.285 3.715 21 O -0.380 6.380 22 C -0.103 4.103 23 C -0.001 4.001 24 H 0.078 0.922 25 H 0.224 0.776 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.259 0.741 31 H 0.217 0.783 32 H 0.227 0.773 33 H 0.052 0.948 34 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.814 -15.277 -2.555 15.952 hybrid contribution -0.593 2.472 -0.239 2.553 sum 3.221 -12.805 -2.794 13.496 Atomic orbital electron populations 1.69804 1.07092 1.28353 1.50302 1.25789 0.95746 1.02747 0.93179 0.85465 0.79262 0.79221 0.77447 1.18778 1.21181 1.20412 1.21898 0.94020 0.91421 1.52133 0.91368 1.19736 0.87092 0.93695 0.80351 1.86091 1.51661 1.56194 1.45361 1.22825 0.96865 0.93556 1.01853 1.23090 0.92769 0.95329 0.91852 1.48623 1.48419 1.11823 1.24924 1.17439 0.78977 0.86399 0.79540 1.90742 1.41492 1.62657 1.53242 1.20523 1.12169 0.94257 0.99865 1.25579 0.93923 0.79937 0.98611 1.84135 1.56087 1.27292 1.36914 1.22779 1.08417 1.00432 0.87435 1.23182 0.74969 0.81237 0.92116 1.90635 1.49878 1.40807 1.56638 1.23212 0.96112 0.89339 1.01675 1.22543 0.99551 0.79762 0.98216 0.92158 0.77623 0.89735 0.88538 0.89571 0.86376 0.74109 0.78335 0.77296 0.94850 0.94969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.87 10.96 21.45 0.24 -48.63 16 2 C 0.03 1.35 5.28 84.65 0.45 1.79 16 3 Si 0.96 41.12 29.54 68.60 2.03 43.15 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.56 -28.08 8.13 25.60 0.21 -27.88 16 8 H 0.07 3.35 7.78 -2.91 -0.02 3.32 16 9 C 0.23 10.56 0.85 -10.35 -0.01 10.55 16 10 O -0.59 -27.89 13.07 -148.98 -1.95 -29.84 16 11 C -0.11 -3.82 6.24 32.06 0.20 -3.62 16 12 C 0.09 2.50 5.31 86.93 0.46 2.96 16 13 N -0.61 -23.00 3.32 -815.13 -2.71 -25.71 16 14 C 0.59 21.94 7.84 86.69 0.68 22.62 16 15 O -0.60 -27.45 17.25 -3.98 -0.07 -27.52 16 16 C -0.26 -7.02 6.09 -20.09 -0.12 -7.14 16 17 C 0.09 2.13 11.95 67.76 0.81 2.94 16 18 O -0.15 -3.43 10.57 9.15 0.10 -3.33 16 19 C -0.14 -2.59 6.89 22.68 0.16 -2.44 16 20 C 0.42 5.83 11.38 68.62 0.78 6.61 16 21 O -0.50 -11.97 17.88 6.92 0.12 -11.84 16 22 C -0.08 -1.54 9.05 22.68 0.21 -1.33 16 23 C 0.12 5.82 5.23 86.73 0.45 6.27 16 24 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 25 H 0.37 18.95 7.45 -74.06 -0.55 18.40 16 26 H 0.08 2.75 8.05 -2.39 -0.02 2.73 16 27 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.09 2.16 8.06 -2.39 -0.02 2.14 16 29 H 0.12 2.19 5.22 -2.39 -0.01 2.18 16 30 H 0.24 4.31 8.06 -2.91 -0.02 4.29 16 31 H 0.20 0.26 8.06 -2.91 -0.02 0.23 16 32 H 0.21 2.43 4.93 -2.91 -0.01 2.42 16 33 H 0.03 1.78 7.82 -2.39 -0.02 1.76 16 34 H 0.03 1.72 7.92 -2.39 -0.02 1.70 16 Total: -1.00 -72.74 297.96 2.63 -70.11 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.61 Total: 22.30 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 4.27 Total: 11.33 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -2.48 Total: -74.34 kcal Atomic # 8 Polarization: -70.74 SS G_CDS: -1.80 Total: -72.54 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -72.74 2.63 -70.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355113582.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.185 kcal (2) G-P(sol) polarization free energy of solvation -72.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds