Wall clock time and date at job start Wed Apr 15 2020 11:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38387 * 119.92576 * 2 1 4 4 C 1.38348 * 120.30397 * 180.02562 * 3 2 1 5 5 C 1.37970 * 120.15232 * 359.72269 * 4 3 2 6 6 N 1.48010 * 120.08202 * 180.27302 * 5 4 3 7 7 O 1.21798 * 119.99807 * 353.44820 * 6 5 4 8 8 O 1.21798 * 120.00063 * 173.44573 * 6 5 4 9 9 C 1.39613 * 119.84166 * 0.55136 * 5 4 3 10 10 C 1.47723 * 120.15029 * 179.71864 * 9 5 4 11 11 O 1.21476 * 120.00111 * 304.98104 * 10 9 5 12 12 O 1.34709 * 119.99814 * 124.96963 * 10 9 5 13 13 C 1.45203 * 117.00099 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47089 * 330.00705 * 13 12 10 15 15 C 1.53007 * 109.46914 * 90.00353 * 13 12 10 16 16 C 1.50699 * 109.47560 * 210.00346 * 13 12 10 17 17 H 1.07999 * 119.99645 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00057 * 179.97438 * 16 13 12 19 19 N 1.31507 * 119.99862 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99915 * 180.02562 * 18 16 13 21 21 H 1.48507 * 109.47006 * 89.99873 * 20 18 16 22 22 H 1.48499 * 109.47006 * 210.00119 * 20 18 16 23 23 H 1.48502 * 109.47280 * 330.00446 * 20 18 16 24 24 C 1.37926 * 119.92568 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.46925 * 269.97985 * 1 2 3 26 26 H 1.09001 * 109.47260 * 29.97968 * 1 2 3 27 27 H 1.08997 * 109.47341 * 149.97506 * 1 2 3 28 28 H 1.08000 * 119.84942 * 0.04066 * 3 2 1 29 29 H 1.08007 * 119.92673 * 180.02562 * 4 3 2 30 30 H 1.08999 * 109.46956 * 60.00269 * 15 13 12 31 31 H 1.08997 * 109.47111 * 300.00099 * 15 13 12 32 32 H 1.09000 * 109.47068 * 180.02562 * 15 13 12 33 33 H 0.97003 * 119.99676 * 180.02562 * 19 18 16 34 34 H 1.08003 * 120.07285 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5808 1.2085 -0.0005 5 6 4.2817 0.0201 0.0047 6 7 5.7617 0.0317 0.0102 7 8 6.3629 1.0841 -0.1102 8 8 6.3785 -1.0111 0.1352 9 6 3.5915 -1.1935 -0.0011 10 6 4.3351 -2.4699 -0.0018 11 8 5.1652 -2.6889 -0.8613 12 8 4.0929 -3.3910 0.9508 13 6 4.8611 -4.6217 0.8884 14 1 5.1103 -4.8422 -0.1495 15 6 6.1488 -4.4607 1.6990 16 6 4.0456 -5.7525 1.4604 17 1 3.0494 -5.5652 1.8331 18 6 4.5708 -7.0265 1.5069 19 7 5.7836 -7.2546 1.0525 20 14 3.5596 -8.4283 2.2152 21 1 2.7662 -9.0628 1.1320 22 1 4.4667 -9.4366 2.8200 23 1 2.6421 -7.9000 3.2564 24 6 2.1950 -1.1954 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6537 2.1325 0.0007 29 1 4.1134 2.1481 -0.0001 30 1 5.8995 -4.2402 2.7370 31 1 6.7386 -3.6428 1.2853 32 1 6.7256 -5.3843 1.6518 33 1 6.1530 -8.1510 1.0849 34 1 1.6550 -2.1307 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515101914.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:55:36 Heat of formation + Delta-G solvation = -65.489108 kcal Electronic energy + Delta-G solvation = -21703.955277 eV Core-core repulsion = 18184.519447 eV Total energy + Delta-G solvation = -3519.435830 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.07219 -40.10038 -38.95738 -36.37364 -35.69101 -33.63047 -33.29541 -31.91105 -29.49951 -28.73018 -25.48493 -25.25325 -24.48432 -22.56149 -21.34783 -19.99517 -19.04418 -18.41105 -17.44197 -17.22642 -16.67413 -15.97849 -15.73646 -15.14362 -14.86372 -14.60312 -14.42573 -14.20203 -13.14609 -12.78375 -12.66594 -12.56661 -12.19124 -12.03253 -11.80736 -11.33971 -11.25434 -11.08135 -10.90606 -10.89538 -10.71406 -10.37956 -10.27177 -9.87944 -9.60675 -9.56293 -9.50245 -8.90233 -8.49823 -6.18544 -4.26447 -0.26735 0.54910 1.34495 1.47365 2.66871 3.00816 3.23242 3.27063 3.30881 3.37776 4.12211 4.24476 4.28719 4.46541 4.58996 4.67816 5.04463 5.14008 5.17040 5.25212 5.41982 5.44783 5.60031 5.61943 5.87718 6.08499 6.48461 6.68789 6.94342 7.02241 7.14086 7.57388 7.74045 7.80668 7.91793 8.12896 8.49447 8.82151 9.38501 10.88643 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.020088 B = 0.005293 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.537994 B = 5288.813894 C = 6472.103433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.040 4.040 3 C -0.109 4.109 4 C -0.055 4.055 5 C -0.018 4.018 6 N 0.020 4.980 7 O -0.173 6.173 8 O -0.114 6.114 9 C -0.026 4.026 10 C 0.490 3.510 11 O -0.476 6.476 12 O -0.345 6.345 13 C 0.218 3.782 14 H 0.049 0.951 15 C -0.157 4.157 16 C -0.524 4.524 17 H 0.068 0.932 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.912 3.088 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.078 4.078 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.150 0.850 29 H 0.158 0.842 30 H 0.035 0.965 31 H 0.027 0.973 32 H 0.099 0.901 33 H 0.267 0.733 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.931 16.219 -1.351 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.040 4.040 3 C -0.127 4.127 4 C -0.074 4.074 5 C -0.101 4.101 6 N 0.542 4.458 7 O -0.384 6.384 8 O -0.338 6.338 9 C -0.029 4.029 10 C 0.330 3.670 11 O -0.363 6.363 12 O -0.261 6.261 13 C 0.166 3.834 14 H 0.067 0.933 15 C -0.214 4.214 16 C -0.562 4.562 17 H 0.086 0.914 18 C -0.139 4.139 19 N -0.523 5.523 20 Si 0.739 3.261 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.097 4.097 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.167 0.833 29 H 0.176 0.824 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.235 15.992 -1.620 19.611 hybrid contribution 0.151 -0.783 0.296 0.850 sum -11.084 15.209 -1.324 18.866 Atomic orbital electron populations 1.20954 0.89129 1.04072 1.03686 1.20335 0.97616 0.92394 0.93673 1.21213 0.92367 0.98857 1.00306 1.20965 0.94638 0.96786 0.95041 1.21096 0.80243 0.95404 1.13337 1.43515 1.03115 1.00753 0.98425 1.94473 1.69301 1.20662 1.53921 1.94750 1.67891 1.20621 1.50549 1.19373 0.94384 0.91071 0.98066 1.20492 0.80649 0.84204 0.81615 1.90871 1.30332 1.77915 1.37197 1.86587 1.62869 1.29131 1.47554 1.20757 0.88724 0.75539 0.98376 0.93331 1.22160 0.98400 1.02365 0.98514 1.20995 1.01779 0.91191 1.42206 0.91369 1.24880 0.95293 0.98544 0.95174 1.69908 1.14904 1.22039 1.45441 0.86272 0.79641 0.81005 0.79178 1.20415 1.20884 1.19639 1.21367 0.90776 0.99918 0.97609 0.89634 0.90486 0.90208 0.83264 0.82413 0.94632 0.95404 0.88229 0.92315 0.82423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.01 36.00 0.36 -0.30 16 2 C -0.04 -0.35 5.87 -104.68 -0.61 -0.97 16 3 C -0.11 -0.87 9.69 -39.49 -0.38 -1.26 16 4 C -0.06 -0.60 9.55 -39.64 -0.38 -0.98 16 5 C -0.02 -0.28 6.85 -79.54 -0.55 -0.83 16 6 N 0.02 0.38 4.45 34.16 0.15 0.54 16 7 O -0.17 -3.06 18.47 -29.46 -0.54 -3.61 16 8 O -0.11 -2.54 15.00 -37.09 -0.56 -3.09 16 9 C -0.03 -0.45 5.76 -104.98 -0.60 -1.05 16 10 C 0.49 10.82 5.97 34.61 0.21 11.02 16 11 O -0.48 -11.86 14.02 -27.26 -0.38 -12.24 16 12 O -0.35 -8.36 9.87 -40.52 -0.40 -8.76 16 13 C 0.22 5.93 2.56 -27.88 -0.07 5.86 16 14 H 0.05 1.45 7.16 -51.93 -0.37 1.08 16 15 C -0.16 -4.12 9.33 37.16 0.35 -3.78 16 16 C -0.52 -14.61 8.90 -34.44 -0.31 -14.92 16 17 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -25.22 11.32 55.43 0.63 -24.59 16 20 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 C -0.08 -0.98 9.44 -39.17 -0.37 -1.35 16 25 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.28 8.08 -51.93 -0.42 -0.14 16 27 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 29 H 0.16 1.38 7.62 -52.48 -0.40 0.98 16 30 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 2.77 6.07 -51.93 -0.32 2.45 16 33 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 34 H 0.16 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 306.90 15.07 4.62 4.62 Total: -1.00 -33.26 306.90 -7.54 -40.79 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -3.59 Total: -2.62 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.45 Total: -6.91 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.78 Total: -24.06 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -1.88 Total: -27.70 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.26 -7.54 -40.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515101914.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.696 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds