Wall clock time and date at job start Wed Apr 15 2020 11:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99897 * 2 1 4 4 H 1.48507 * 109.46897 * 269.99901 * 3 2 1 5 5 H 1.48500 * 109.47051 * 29.99723 * 3 2 1 6 6 H 1.48494 * 109.47288 * 150.00273 * 3 2 1 7 7 C 1.37876 * 120.00427 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99625 * 0.27782 * 7 2 1 9 9 C 1.50696 * 120.00333 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.47561 * 300.00431 * 9 7 2 11 11 O 1.42903 * 109.47063 * 59.99957 * 9 7 2 12 12 C 1.53000 * 109.47147 * 179.97438 * 9 7 2 13 13 N 1.46906 * 109.47086 * 179.97438 * 12 9 7 14 14 C 1.46992 * 111.00201 * 189.78173 * 13 12 9 15 15 C 1.51293 * 111.61346 * 29.98642 * 14 13 12 16 16 C 1.51726 * 115.86283 * 70.59700 * 15 14 13 17 17 S 1.82203 * 109.60186 * 291.49632 * 16 15 14 18 18 C 1.77625 * 101.02882 * 78.93142 * 17 16 15 19 19 C 1.38264 * 120.36671 * 114.13484 * 18 17 16 20 20 C 1.38576 * 119.14273 * 179.62417 * 19 18 17 21 21 C 1.38264 * 119.93247 * 359.91952 * 20 19 18 22 22 C 1.38275 * 120.70826 * 0.23044 * 21 20 19 23 23 C 1.38212 * 118.20909 * 294.05054 * 18 17 16 24 24 H 0.96994 * 120.00272 * 0.02562 * 1 2 3 25 25 H 0.96705 * 113.99639 * 60.00298 * 11 9 7 26 26 H 1.08997 * 109.47596 * 300.00234 * 12 9 7 27 27 H 1.08998 * 109.47085 * 60.00476 * 12 9 7 28 28 H 1.08998 * 109.05318 * 150.54172 * 14 13 12 29 29 H 1.09005 * 109.04760 * 269.44538 * 14 13 12 30 30 H 1.09000 * 108.20246 * 192.25279 * 15 14 13 31 31 H 1.08997 * 108.20633 * 309.13666 * 15 14 13 32 32 H 1.08999 * 109.45501 * 51.53503 * 16 15 14 33 33 H 1.09002 * 109.44790 * 171.48823 * 16 15 14 34 34 H 1.08004 * 120.42474 * 359.64251 * 19 18 17 35 35 H 1.07998 * 120.03503 * 179.90079 * 20 19 18 36 36 H 1.07996 * 119.64932 * 180.20345 * 21 20 19 37 37 H 1.07996 * 120.15263 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 -0.0036 9 6 3.5116 -1.1940 0.0000 10 1 3.8746 -0.6807 -0.8905 11 8 3.9883 -0.5195 1.1661 12 6 4.0216 -2.6365 0.0014 13 7 5.4907 -2.6364 0.0002 14 6 6.0173 -3.9890 -0.2317 15 6 5.0790 -4.8137 -1.0852 16 6 4.9823 -4.4080 -2.5440 17 16 4.1595 -2.7875 -2.6746 18 6 5.4932 -1.6940 -2.2495 19 6 6.0072 -0.8201 -3.1896 20 6 7.0424 0.0273 -2.8283 21 6 7.5458 -0.0083 -1.5411 22 6 7.0305 -0.8862 -0.6053 23 6 5.9936 -1.7435 -0.9621 24 1 -0.4850 0.8400 -0.0004 25 1 3.7033 -0.9226 1.9977 26 1 3.6586 -3.1494 0.8920 27 1 3.6580 -3.1512 -0.8879 28 1 6.9819 -3.9141 -0.7337 29 1 6.1549 -4.4866 0.7284 30 1 5.4041 -5.8532 -1.0418 31 1 4.0812 -4.7527 -0.6509 32 1 5.9836 -4.3419 -2.9696 33 1 4.4041 -5.1531 -3.0904 34 1 5.6068 -0.7980 -4.1924 35 1 7.4558 0.7146 -3.5516 36 1 8.3504 0.6565 -1.2635 37 1 7.4302 -0.9061 0.3978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929223254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:57:06 Heat of formation + Delta-G solvation = 17.334027 kcal Electronic energy + Delta-G solvation = -20858.975311 eV Core-core repulsion = 17921.716927 eV Total energy + Delta-G solvation = -2937.258384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.06254 -37.30320 -35.50651 -32.69464 -32.09527 -30.79321 -29.58380 -28.69829 -26.12081 -24.45470 -22.55423 -22.01498 -21.04016 -19.59094 -17.52368 -17.13038 -16.44730 -15.69710 -15.12086 -14.76133 -14.64255 -14.59353 -14.08859 -13.95274 -13.47808 -13.33913 -12.84002 -12.57846 -12.33205 -12.23098 -11.91389 -11.43498 -11.39653 -11.17310 -10.93681 -10.87664 -10.67604 -10.21671 -9.90675 -9.75270 -8.93682 -8.70847 -8.64805 -8.49554 -8.08536 -7.99345 -6.66558 -6.01075 -4.08669 1.21887 1.57674 1.97980 2.73465 3.46764 3.55250 3.84378 3.91726 4.21992 4.64449 4.64927 4.94023 5.11709 5.17470 5.25888 5.34995 5.38372 5.45089 5.54165 5.69035 5.71183 5.81166 5.95760 6.05072 6.10137 6.18500 6.28316 6.38186 6.44724 6.63498 6.64211 6.92618 7.00075 7.35931 7.52890 7.70143 7.82309 8.43433 8.97593 9.23881 9.65927 11.09986 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.009070 C = 0.007675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.163300 B = 3086.299125 C = 3647.409741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.084 3.916 3 Si 0.862 3.138 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.216 1.216 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.202 3.798 10 H 0.053 0.947 11 O -0.576 6.576 12 C -0.008 4.008 13 N -0.487 5.487 14 C 0.056 3.944 15 C -0.162 4.162 16 C -0.105 4.105 17 S -0.121 6.121 18 C -0.138 4.138 19 C -0.072 4.072 20 C -0.139 4.139 21 C -0.101 4.101 22 C -0.100 4.100 23 C 0.147 3.853 24 H 0.262 0.738 25 H 0.352 0.648 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.423 -7.028 -4.608 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.119 4.119 3 Si 0.689 3.311 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.138 1.138 7 C -0.586 4.586 8 H 0.090 0.910 9 C 0.144 3.856 10 H 0.071 0.929 11 O -0.381 6.381 12 C -0.136 4.136 13 N -0.207 5.207 14 C -0.070 4.070 15 C -0.202 4.202 16 C -0.253 4.253 17 S 0.117 5.883 18 C -0.252 4.252 19 C -0.093 4.093 20 C -0.159 4.159 21 C -0.120 4.120 22 C -0.120 4.120 23 C 0.049 3.951 24 H 0.072 0.928 25 H 0.197 0.803 26 H 0.085 0.915 27 H 0.119 0.881 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.549 -6.255 -4.899 16.577 hybrid contribution 0.778 0.140 -0.116 0.799 sum 15.327 -6.116 -5.015 17.247 Atomic orbital electron populations 1.69954 1.06636 1.27114 1.49778 1.24918 0.94509 0.99634 0.92886 0.87150 0.83302 0.82345 0.78284 1.21675 1.22395 1.13813 1.21423 0.89746 0.94562 1.52828 0.91034 1.19773 0.93455 0.86837 0.85533 0.92904 1.86664 1.77983 1.57268 1.16166 1.24081 0.82927 1.02765 1.03845 1.60821 1.11558 1.04886 1.43467 1.21895 0.97160 0.88531 0.99434 1.21802 1.03635 1.00509 0.94268 1.23466 1.03785 0.98076 0.99960 1.86586 1.14060 0.98749 1.88949 1.22209 1.02045 1.04426 0.96482 1.21214 0.94791 0.94767 0.98564 1.21161 0.97891 0.99985 0.96821 1.21171 0.99594 0.97903 0.93348 1.21176 0.96492 0.94860 0.99514 1.19021 0.93514 0.94626 0.87899 0.92843 0.80250 0.91547 0.88052 0.92074 0.89827 0.91061 0.89343 0.90073 0.87485 0.85267 0.85864 0.85950 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 2 C 0.08 2.50 5.47 -17.82 -0.10 2.41 16 3 Si 0.86 23.00 26.99 -169.99 -4.59 18.42 16 4 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 5 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 6 H -0.22 -5.68 5.30 56.52 0.30 -5.38 16 7 C -0.55 -15.59 9.34 -34.44 -0.32 -15.91 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C 0.20 4.90 1.47 -27.88 -0.04 4.86 16 10 H 0.05 1.39 5.05 -51.93 -0.26 1.13 16 11 O -0.58 -13.84 10.00 -35.23 -0.35 -14.19 16 12 C -0.01 -0.17 3.10 -3.82 -0.01 -0.18 16 13 N -0.49 -8.52 4.77 -171.89 -0.82 -9.34 16 14 C 0.06 0.77 5.93 -4.63 -0.03 0.74 16 15 C -0.16 -2.04 5.02 -28.24 -0.14 -2.18 16 16 C -0.11 -1.36 6.21 36.51 0.23 -1.13 16 17 S -0.12 -2.14 17.58 -107.50 -1.89 -4.03 16 18 C -0.14 -2.44 4.19 -39.58 -0.17 -2.61 16 19 C -0.07 -1.13 9.85 -39.45 -0.39 -1.52 16 20 C -0.14 -1.93 10.07 -39.45 -0.40 -2.33 16 21 C -0.10 -1.42 10.01 -39.56 -0.40 -1.82 16 22 C -0.10 -1.61 9.97 -39.21 -0.39 -2.00 16 23 C 0.15 2.61 3.15 -83.50 -0.26 2.35 16 24 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 25 H 0.35 7.63 9.04 45.56 0.41 8.04 16 26 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.10 2.02 2.49 -20.64 -0.05 1.97 16 28 H 0.06 0.79 7.68 -51.93 -0.40 0.39 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.28 5.90 -51.93 -0.31 0.97 16 32 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 33 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.13 1.82 8.06 -52.48 -0.42 1.39 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 295.97 15.07 4.46 4.46 Total: -1.00 -33.12 295.97 -8.90 -42.02 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -4.07 Total: 9.35 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -2.42 Total: -19.34 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.05 Total: -36.69 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.35 Total: -14.19 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.59 Total: 18.42 kcal Atomic # 16 Polarization: -2.14 SS G_CDS: -1.89 Total: -4.03 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.12 -8.90 -42.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929223254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.350 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds