Wall clock time and date at job start Wed Apr 15 2020 11:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86799 * 120.00327 * 2 1 4 4 H 1.48500 * 109.47136 * 270.00244 * 3 2 1 5 5 H 1.48505 * 109.46808 * 29.99822 * 3 2 1 6 6 H 1.48497 * 109.47444 * 149.99865 * 3 2 1 7 7 C 1.38639 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00107 * 359.97438 * 7 2 1 9 9 O 1.34811 * 119.99923 * 179.97438 * 7 2 1 10 10 C 1.35770 * 117.00057 * 174.97406 * 9 7 2 11 11 C 1.38741 * 120.08824 * 5.20820 * 10 9 7 12 12 C 1.38340 * 119.97861 * 179.97438 * 11 10 9 13 13 F 1.35097 * 119.92497 * 180.02562 * 12 11 10 14 14 C 1.38553 * 120.15399 * 0.02562 * 12 11 10 15 15 C 1.38190 * 120.17427 * 359.68366 * 14 12 11 16 16 C 1.38716 * 120.02132 * 0.59208 * 15 14 12 17 17 N 1.40083 * 120.07676 * 179.70176 * 16 15 14 18 18 C 1.34781 * 120.00153 * 335.23438 * 17 16 15 19 19 O 1.21293 * 119.99927 * 354.55815 * 18 17 16 20 20 C 1.50692 * 120.00079 * 174.55763 * 18 17 16 21 21 C 1.52999 * 109.47404 * 180.02562 * 20 18 17 22 22 C 1.53005 * 117.50202 * 243.74931 * 21 20 18 23 23 C 1.52996 * 117.50185 * 175.08772 * 21 20 18 24 24 H 0.97005 * 119.99876 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.01209 * 359.96141 * 11 10 9 26 26 H 1.07992 * 119.91374 * 179.97438 * 14 12 11 27 27 H 1.08006 * 119.99196 * 180.31900 * 15 14 12 28 28 H 0.96995 * 120.00088 * 155.51612 * 17 16 15 29 29 H 1.09002 * 109.47664 * 300.00205 * 20 18 17 30 30 H 1.08999 * 109.47337 * 60.00414 * 20 18 17 31 31 H 1.09002 * 115.55068 * 29.41465 * 21 20 18 32 32 H 1.08996 * 117.49777 * 359.97438 * 22 21 20 33 33 H 1.09001 * 117.49838 * 145.01565 * 22 21 20 34 34 H 1.09001 * 117.49827 * 214.98099 * 23 21 20 35 35 H 1.08991 * 117.50013 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5473 1.4401 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1359 -0.0005 9 8 3.3570 -1.2008 -0.0011 10 6 3.9733 -2.4059 0.1044 11 6 3.2239 -3.5734 0.0977 12 6 3.8543 -4.8002 0.2048 13 9 3.1235 -5.9364 0.1977 14 6 5.2335 -4.8662 0.3193 15 6 5.9867 -3.7076 0.3206 16 6 5.3616 -2.4734 0.2195 17 7 6.1235 -1.2979 0.2270 18 6 7.3385 -1.2860 0.8103 19 8 7.7310 -2.2620 1.4140 20 6 8.2094 -0.0601 0.7123 21 6 9.5246 -0.3082 1.4536 22 6 9.8222 0.5633 2.6755 23 6 10.5970 0.7801 1.3733 24 1 -0.4850 0.8401 0.0004 25 1 2.1486 -3.5246 0.0092 26 1 5.7216 -5.8259 0.4031 27 1 7.0620 -3.7628 0.4049 28 1 5.7750 -0.4914 -0.1840 29 1 8.4184 0.1545 -0.3357 30 1 7.6936 0.7888 1.1611 31 1 9.8606 -1.3448 1.4810 32 1 9.0812 1.3136 2.9511 33 1 10.3542 0.1000 3.5065 34 1 11.6385 0.4595 1.3481 35 1 10.3654 1.6730 0.7928 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120622271.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:58:06 Heat of formation + Delta-G solvation = -56.802653 kcal Electronic energy + Delta-G solvation = -21092.412132 eV Core-core repulsion = 17585.725765 eV Total energy + Delta-G solvation = -3506.686368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.30116 -40.36636 -38.93627 -37.30224 -36.36824 -34.25056 -32.53570 -30.32713 -29.53245 -27.91447 -25.46333 -22.91018 -22.52570 -21.78184 -20.91250 -19.91165 -18.37034 -18.06701 -17.14760 -16.78771 -15.87461 -15.44892 -15.26502 -14.98721 -14.88101 -14.22900 -14.15654 -13.88701 -13.81521 -13.47736 -13.29806 -12.65817 -12.46130 -12.28241 -11.90454 -11.67756 -11.59244 -11.49128 -11.01169 -10.82756 -10.50881 -10.48536 -10.16512 -9.91512 -9.77429 -9.40561 -9.03456 -8.00535 -7.23924 -6.57008 -4.24511 1.66903 1.98224 2.80951 3.08235 3.10625 3.20118 3.26476 3.69211 4.05953 4.22343 4.47183 4.54551 4.66163 4.77795 4.91884 4.96163 4.99239 5.32689 5.39048 5.47436 5.47802 5.55607 5.66475 5.74646 5.87195 5.95467 6.05530 6.18360 6.37841 6.67222 6.78584 6.83859 6.93579 7.42400 7.59288 7.73160 7.84424 8.35239 8.75687 9.29909 10.50149 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012094 B = 0.006333 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.687795 B = 4420.421358 C = 6583.558947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.391 4.391 8 H 0.109 0.891 9 O -0.211 6.211 10 C 0.162 3.838 11 C -0.244 4.244 12 C 0.126 3.874 13 F -0.149 7.149 14 C -0.218 4.218 15 C -0.062 4.062 16 C 0.064 3.936 17 N -0.653 5.653 18 C 0.511 3.489 19 O -0.529 6.529 20 C -0.111 4.111 21 C -0.138 4.138 22 C -0.179 4.179 23 C -0.182 4.182 24 H 0.282 0.718 25 H 0.149 0.851 26 H 0.125 0.875 27 H 0.149 0.851 28 H 0.413 0.587 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.507 1.551 0.124 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.466 4.466 8 H 0.126 0.874 9 O -0.115 6.115 10 C 0.107 3.893 11 C -0.265 4.265 12 C 0.106 3.894 13 F -0.127 7.127 14 C -0.239 4.239 15 C -0.083 4.083 16 C -0.030 4.030 17 N -0.297 5.297 18 C 0.299 3.701 19 O -0.407 6.407 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.216 4.216 23 C -0.219 4.219 24 H 0.092 0.908 25 H 0.167 0.833 26 H 0.143 0.857 27 H 0.166 0.834 28 H 0.248 0.752 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.651 1.242 0.520 15.709 hybrid contribution -0.428 0.899 -0.178 1.011 sum 15.223 2.140 0.342 15.376 Atomic orbital electron populations 1.69644 1.05578 1.28740 1.46849 1.24474 0.95049 0.98818 0.95502 0.86199 0.80328 0.81498 0.78948 1.19677 1.20585 1.18416 1.20757 0.76315 0.96887 1.52683 0.87364 1.83479 1.23176 1.24734 1.80148 1.18431 0.89331 0.85897 0.95606 1.20974 1.02115 0.90075 1.13301 1.17472 0.89089 0.81337 1.01452 1.91426 1.77878 1.49414 1.94030 1.20567 0.91563 0.99072 1.12669 1.20784 1.00709 0.88970 0.97809 1.16955 0.87093 0.86591 1.12400 1.43244 1.17230 1.12789 1.56439 1.20605 0.81671 0.89846 0.77990 1.90623 1.72860 1.36083 1.41088 1.21225 0.94470 0.96598 1.02784 1.22038 0.94850 0.97806 1.00910 1.23051 1.03568 1.02971 0.92010 1.23006 0.97054 1.00557 1.01242 0.90784 0.83317 0.85711 0.83351 0.75160 0.88208 0.88612 0.86278 0.88796 0.88774 0.88750 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.06 13.96 55.48 0.77 -23.28 16 2 C 0.07 1.74 5.49 -17.51 -0.10 1.65 16 3 Si 0.91 19.83 28.62 -169.99 -4.86 14.97 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.39 -10.36 9.95 30.88 0.31 -10.05 16 8 H 0.11 2.99 5.44 -52.49 -0.29 2.70 16 9 O -0.21 -5.04 7.99 0.04 0.00 -5.03 16 10 C 0.16 3.54 6.66 -38.94 -0.26 3.28 16 11 C -0.24 -5.26 9.14 -39.36 -0.36 -5.62 16 12 C 0.13 2.49 7.29 -39.43 -0.29 2.20 16 13 F -0.15 -2.85 17.26 2.25 0.04 -2.81 16 14 C -0.22 -3.91 10.02 -39.48 -0.40 -4.31 16 15 C -0.06 -1.14 8.72 -39.42 -0.34 -1.48 16 16 C 0.06 1.24 6.45 -83.45 -0.54 0.70 16 17 N -0.65 -10.78 5.29 -9.72 -0.05 -10.83 16 18 C 0.51 7.70 7.64 -10.99 -0.08 7.62 16 19 O -0.53 -9.38 12.73 5.55 0.07 -9.31 16 20 C -0.11 -1.20 5.98 -27.89 -0.17 -1.36 16 21 C -0.14 -1.46 5.41 -90.62 -0.49 -1.95 16 22 C -0.18 -1.72 10.18 -26.69 -0.27 -1.99 16 23 C -0.18 -1.53 10.25 -26.70 -0.27 -1.80 16 24 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.15 3.36 5.63 -52.49 -0.30 3.07 16 26 H 0.12 1.92 8.06 -52.49 -0.42 1.49 16 27 H 0.15 2.60 5.78 -52.48 -0.30 2.29 16 28 H 0.41 6.23 8.34 -40.82 -0.34 5.89 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.10 0.93 7.88 -51.93 -0.41 0.52 16 31 H 0.12 1.44 7.31 -51.93 -0.38 1.06 16 32 H 0.09 0.86 8.03 -51.93 -0.42 0.45 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 307.70 15.07 4.64 4.64 Total: -1.00 -28.86 307.70 -6.33 -35.19 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -3.68 Total: 9.62 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -3.26 Total: -13.14 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.72 Total: -34.11 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.07 Total: -14.35 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.86 Total: 14.97 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.86 -6.33 -35.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120622271.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.614 kcal (2) G-P(sol) polarization free energy of solvation -28.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds