Wall clock time and date at job start Wed Apr 15 2020 11:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.38362 * 119.93150 * 269.72103 * 10 9 7 12 12 C 1.38328 * 120.27009 * 179.73037 * 11 10 9 13 13 C 1.38009 * 120.13169 * 0.54562 * 12 11 10 14 14 C 1.39451 * 119.86328 * 359.72982 * 13 12 11 15 15 C 1.48139 * 120.13189 * 179.97438 * 14 13 12 16 16 C 1.39872 * 126.39024 * 129.71300 * 15 14 13 17 17 N 1.31124 * 108.86044 * 179.85239 * 16 15 14 18 18 N 1.39907 * 109.23924 * 0.40968 * 17 16 15 19 19 C 1.36544 * 132.37329 * 179.71673 * 18 17 16 20 20 C 1.35584 * 119.12293 * 180.02562 * 19 18 17 21 21 C 1.40175 * 119.42712 * 359.97438 * 20 19 18 22 22 N 1.31325 * 120.22525 * 0.02562 * 21 20 19 23 23 C 1.33650 * 120.84244 * 0.02562 * 22 21 20 24 24 C 1.37965 * 119.93132 * 89.99702 * 10 9 7 25 25 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 27 27 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 28 28 H 1.08004 * 119.86960 * 0.02562 * 11 10 9 29 29 H 1.07996 * 119.93594 * 180.27931 * 12 11 10 30 30 H 1.07999 * 120.06673 * 179.70706 * 13 12 11 31 31 H 1.08001 * 125.56947 * 359.97438 * 16 15 14 32 32 H 1.08002 * 120.43630 * 0.02562 * 19 18 17 33 33 H 1.08002 * 120.28359 * 179.97438 * 20 19 18 34 34 H 1.07999 * 119.88783 * 180.02562 * 21 20 19 35 35 H 1.08000 * 120.06659 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 6 2.6692 -4.1699 -1.2158 12 6 3.5723 -5.2175 -1.2308 13 6 4.0325 -5.7526 -0.0448 14 6 3.5896 -5.2312 1.1703 15 6 4.0792 -5.8013 2.4469 16 6 4.6098 -5.0864 3.5256 17 7 4.9303 -5.9301 4.4768 18 7 4.6324 -7.2315 4.0583 19 6 4.7772 -8.4479 4.6615 20 6 4.3917 -9.5645 3.9959 21 6 3.8539 -9.4467 2.7068 22 7 3.7255 -8.2645 2.1495 23 6 4.1032 -7.1575 2.7962 24 6 2.6831 -4.1709 1.1789 25 1 -0.4850 -0.8400 0.0004 26 1 0.6281 -2.5591 0.8866 27 1 0.6207 -2.5548 -0.8933 28 1 2.3088 -3.7571 -2.1465 29 1 3.9147 -5.6204 -2.1725 30 1 4.7340 -6.5736 -0.0578 31 1 4.7333 -4.0143 3.5689 32 1 5.1932 -8.5196 5.6555 33 1 4.4982 -10.5362 4.4550 34 1 3.5441 -10.3311 2.1700 35 1 2.3361 -3.7632 2.1169 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240929026.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:59:07 Heat of formation + Delta-G solvation = 131.330172 kcal Electronic energy + Delta-G solvation = -19888.413650 eV Core-core repulsion = 16852.947310 eV Total energy + Delta-G solvation = -3035.466340 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.39227 -38.69509 -37.96253 -34.45381 -33.61764 -31.48015 -31.26035 -30.78219 -28.00015 -26.51118 -24.98439 -23.67537 -23.01479 -22.46480 -20.88898 -19.94348 -18.18099 -17.36642 -16.82496 -16.34281 -16.13807 -15.71498 -14.73762 -14.42635 -14.28669 -13.74534 -13.64908 -13.25826 -13.05802 -12.93450 -12.77068 -12.26525 -11.82494 -11.53816 -11.28386 -11.24869 -11.04004 -10.65337 -10.30909 -10.12324 -10.00988 -9.77707 -9.69159 -8.91615 -8.55434 -8.33693 -7.81610 -7.40245 -6.34324 -4.05240 0.31946 0.65990 1.88104 1.91074 2.17930 2.62450 3.28100 3.46377 3.48095 3.66863 3.70895 3.93651 4.14713 4.45900 4.59745 4.66111 4.90586 5.07669 5.15284 5.33036 5.39967 5.50908 5.61233 5.68275 5.78059 5.95627 6.09050 6.25644 6.31701 6.37401 6.64098 6.79013 7.07815 7.15137 7.18882 7.24274 7.32571 7.48931 7.72467 7.73589 8.17422 8.47392 8.87622 9.65711 11.04512 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026389 B = 0.003912 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.810942 B = 7155.389217 C = 7736.124621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.590 4.590 8 H 0.051 0.949 9 C 0.036 3.964 10 C -0.030 4.030 11 C -0.122 4.122 12 C -0.122 4.122 13 C -0.121 4.121 14 C -0.010 4.010 15 C -0.167 4.167 16 C 0.107 3.893 17 N -0.313 5.313 18 N -0.316 5.316 19 C 0.163 3.837 20 C -0.230 4.230 21 C 0.169 3.831 22 N -0.447 5.447 23 C 0.256 3.744 24 C -0.110 4.110 25 H 0.269 0.731 26 H 0.018 0.982 27 H 0.019 0.981 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.204 0.796 32 H 0.177 0.823 33 H 0.165 0.835 34 H 0.178 0.822 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.872 -20.238 7.402 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.188 4.188 3 Si 0.898 3.102 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.629 4.629 8 H 0.069 0.931 9 C -0.001 4.001 10 C -0.030 4.030 11 C -0.140 4.140 12 C -0.140 4.140 13 C -0.139 4.139 14 C -0.012 4.012 15 C -0.180 4.180 16 C -0.071 4.071 17 N -0.136 5.136 18 N -0.087 5.087 19 C 0.028 3.972 20 C -0.255 4.255 21 C -0.016 4.016 22 N -0.157 5.157 23 C 0.029 3.971 24 C -0.128 4.128 25 H 0.079 0.921 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.220 0.780 32 H 0.194 0.806 33 H 0.183 0.817 34 H 0.195 0.805 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.854 -18.260 7.768 22.155 hybrid contribution 0.277 -1.841 0.108 1.865 sum 10.131 -20.101 7.875 23.847 Atomic orbital electron populations 1.70783 1.06869 1.30610 1.46593 1.25872 0.96514 1.02625 0.93767 0.83530 0.74865 0.75210 0.76616 1.20776 1.21383 1.21383 1.21906 0.94366 0.90841 1.55748 0.93057 1.18465 0.93243 0.91418 0.96995 1.20308 0.96214 0.94581 0.91871 1.21098 0.98271 0.96570 0.98094 1.20918 0.98432 0.97474 0.97220 1.20832 1.01226 1.00251 0.91604 1.17735 0.97579 0.96373 0.89474 1.18450 1.13721 0.87676 0.98113 1.24133 0.93368 1.00404 0.89245 1.77718 1.29078 0.83889 1.22913 1.47016 1.41475 1.06715 1.13480 1.22011 0.95328 0.80757 0.99114 1.21791 1.06767 0.99053 0.97853 1.23413 0.91001 0.95286 0.91930 1.68157 1.16941 0.96996 1.33638 1.20510 0.98316 0.94742 0.83493 1.21034 0.97494 0.95980 0.98284 0.92074 0.96357 0.96290 0.86633 0.86969 0.87414 0.77989 0.80590 0.81732 0.80487 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.98 13.65 55.43 0.76 -27.22 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 3 Si 1.07 25.48 29.90 -169.99 -5.08 20.40 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.59 -16.94 9.09 -34.44 -0.31 -17.25 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.93 4.41 -29.03 -0.13 0.80 16 10 C -0.03 -0.67 5.06 -104.68 -0.53 -1.20 16 11 C -0.12 -2.50 9.69 -39.50 -0.38 -2.88 16 12 C -0.12 -2.17 10.03 -39.63 -0.40 -2.57 16 13 C -0.12 -2.14 9.73 -39.21 -0.38 -2.52 16 14 C -0.01 -0.19 5.76 -104.91 -0.60 -0.80 16 15 C -0.17 -2.81 5.65 -104.54 -0.59 -3.40 16 16 C 0.11 1.62 11.86 -17.24 -0.20 1.41 16 17 N -0.31 -4.63 12.62 30.67 0.39 -4.24 16 18 N -0.32 -4.23 3.89 -11.98 -0.05 -4.28 16 19 C 0.16 1.39 11.30 -16.40 -0.19 1.20 16 20 C -0.23 -1.43 10.05 -39.80 -0.40 -1.83 16 21 C 0.17 1.43 11.27 -17.04 -0.19 1.23 16 22 N -0.45 -6.08 10.47 -12.00 -0.13 -6.20 16 23 C 0.26 3.93 7.82 -155.45 -1.22 2.71 16 24 C -0.11 -2.28 9.38 -39.21 -0.37 -2.65 16 25 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 26 H 0.02 0.50 7.95 -51.93 -0.41 0.08 16 27 H 0.02 0.51 7.94 -51.93 -0.41 0.10 16 28 H 0.12 2.29 8.06 -52.48 -0.42 1.86 16 29 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 30 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.20 2.60 8.06 -52.49 -0.42 2.18 16 32 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.17 0.32 8.06 -52.49 -0.42 -0.11 16 34 H 0.18 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 313.76 15.07 4.73 4.73 Total: -1.00 -35.27 313.76 -9.08 -44.35 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -3.71 Total: -0.17 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -5.99 Total: -27.37 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.97 Total: -41.94 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.27 -9.08 -44.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240929026.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.681 kcal (2) G-P(sol) polarization free energy of solvation -35.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds